Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g0853 ATGGTGCACGTCTCATTCTATAGAAACTATGGGAAAACCTTCAAGAAGCCTCGTCGTCCGTATGAGAAGGAGCGTCTAGATCACGAGCTCAAGCTCGTCGGCGAGTACGGTCTTCGCTGCAAGAGGGAATTGTGGAGGGTTCAGTATGCGCTCAGCCGCATACGTGATGCGGCTAGAATGCTTCTCACGGTCGATGAGAAGAATCCTCGTCGTATCTTCGAAGGTGAAGCTCTTCTTAGGAGGATGAACAGGTACGGTTTACTCGATGAGAGCCAGAACAAACTCGATTATGTCTTGGCTCTTACCGTCGAGAATTTCCTCGAACACCGTCTTCAGACGCTGGTCTTCAAGTCCGGCATGGCCAAGTCGATCCACCACGCTAGAGTTTTGATCAGACAGAGGCATATCAGGGTCGGAAGGCAGGTTGTGAACATTCCCTCGTTTATGGTGAGGTTAGACTCACAAAAACACATAGACTTCTCACTAACGAGTCCTTTTGGTGGTGGACGTCCTGGAAGAGTGAAGCGGAAGAACCAAAGGGCAGCTGCTAAGAAAGCTGCCGGGGGTGATGGAGATGAGGAGGATAAAGAGTGA 594 0.5034 MVHVSFYRNYGKTFKKPRRPYEKERLDHELKLVGEYGLRCKRELWRVQYALSRIRDAARMLLTVDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLEHRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRLDSQKHIDFSLTSPFGGGRPGRVKRKNQRAAAKKAAGGDGDEEDKE 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g0853 197 CDD S4 110 151 - -
Acco12g0853 197 FunFam 40S ribosomal protein S9 108 188 - -
Acco12g0853 197 SMART Ribosomal_S4_2 8 108 IPR001912 GO:0019843
Acco12g0853 197 MobiDBLite consensus disorder prediction 164 197 - -
Acco12g0853 197 SMART s4_6 109 180 IPR002942 GO:0003723
Acco12g0853 197 ProSiteProfiles S4 RNA-binding domain profile. 110 183 - -
Acco12g0853 197 NCBIfam 30S ribosomal protein S4 11 166 IPR005710 GO:0003735|GO:0006412|GO:0015935
Acco12g0853 197 SUPERFAMILY Alpha-L RNA-binding motif 12 160 - -
Acco12g0853 197 Pfam S4 domain 110 152 IPR002942 GO:0003723
Acco12g0853 197 PANTHER 30S 40S RIBOSOMAL PROTEIN 7 183 IPR022801 GO:0003735|GO:0015935|GO:0019843
Acco12g0853 197 Gene3D - 108 165 IPR036986 GO:0003723
Acco12g0853 197 Pfam Ribosomal protein S4/S9 N-terminal domain 8 108 IPR001912 GO:0019843
Acco12g0853 197 ProSitePatterns Ribosomal protein S4 signature. 107 131 IPR018079 GO:0019843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g0853 Acco-ChrAcco12 8398070 8403170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g0853 1 187 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 90.374 1.83e-126 352