Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g0848 ATGTCTAGCAGAAGATCTCGTTCCAGCACCAGAGAGATCAGTGATGCCCAGATCAACGATCTTGTCTCCAAGTTACAACGCCTTATTCCTCAGCTTCAACCCTCTCCCTCCCAGCAGAAGGTATCAGCAGCGAAGGTGTTGAAGGAGACTTGCGACTATGTAAAGAAGTTGCACAGAGAAGTTGATGATCTTAGTGATCGATTATCTGAGCTTTTGGCTAACACTGACTCCCACAGTGCAGAAGCTGCCATTCTTAGATCAGAAAAGGAAACTGGAGTATCAGTAGCCACTAGAGAACAAAATCCCAGTTTGACCAAATTAACTCTATATGAAACTGCCCAGGAAGAGAAAATGGTTCCAAGTCCATCTCTCCTGCAAAGGCTGGAACGATAA 393 0.4504 MSSRRSRSSTREISDAQINDLVSKLQRLIPQLQPSPSQQKVSAAKVLKETCDYVKKLHREVDDLSDRLSELLANTDSHSAEAAILRSEKETGVSVATREQNPSLTKLTLYETAQEEKMVPSPSLLQRLER 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g0848 130 Gene3D - 15 89 IPR036638 GO:0046983
Acco12g0848 130 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 17 78 IPR036638 GO:0046983
Acco12g0848 130 PANTHER TRANSCRIPTION FACTOR PRE 1 87 IPR044293 GO:0006355|GO:0040008|GO:0046983
Acco12g0848 130 Pfam Helix-loop-helix DNA-binding domain 17 57 IPR011598 GO:0046983
Acco12g0848 130 Coils Coil 54 74 - -
Acco12g0848 130 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 2 57 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g0848 Acco-ChrAcco12 8317803 8320646 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g0848 13 87 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G74500 62.667 1.47e-27 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Acco12g0848 HLH 1.1e-06 No_clan