Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g0842 ATGTTCCGTCCTTCGTTCATTGCCCAGTCAAAGGAAGGAGCGTCCTACAAGGAGAGCCTCACCATTACAATAAACCCTTCAAGCGCTGAGAGAGATATGAGGAAGCTGAAGCAGCAGCTGGGTAAGCAAGAAGAATCTCAGAAGAAGGAGCGTCATATTGTGACGTGGACACAAGAGGAAGATGATACATTGAGGAAACAGATAAGCATCCATGGAACTGAGAATTGGGCAATAATTGCATCTAACTTCAAAGACAAAACGACAAGACAGTGCAGAAGAAGATGGTACACTTACTTGAACTCTGATTTCAAGAAAGGAGGATGGTCACCAGAGGAAGACTTGCTGTTATGTGAGGCTCAGAAAATATTTGGCAACAGATGGACAGAAATAGCAAAGGTGGTTTCAGGCAGAACGGATAACGCTGTGAAAAATCGTTTCTCCACTCTGTGCAAGAAGAGAGCAAAATTTGAGGCCTTGGCAAAAGAGAATAACACTTCATTCATTAATTCAAATAACAAAAGGACTATTTTCCAACAGGGTGATAACAGAGAGTCAACATCTGAGGCTGAACCACCTGCTAAGAAAATGAGGAGAGCTCATATCCCTGATGCTGCAGAAAAGATCAACTATGGACACAGGTCCCATAAGCATTATGAAGCAACAATAAAACAGCAGCCAAGAGCGCTGTTTTCTATTTTGGCTCAGAATTTGCCAGATCAGCATGAAGCCTCCAATGACAAGATCAGCAGAAATGCCCATGATTCCAAGACTCGAGGAACATTTCTTGAAGAGTATGATCCAAAGATTAGTATGTTGATGCAACAAGCGGAGTTATTAAGTTCACTAACTCTAAAAGTTAATACAGATGATGTGGACCAGAGTCTTGAAGACGCATGGAAGGTACTTCAAGAGTTTCTGAACCAAACCAAAGAATCAGACATTCTCAAATATAAGATTTCAGATTTACAGCTCGTAGATCTTAAATATATGATGGAGGAATTTAAGAGTAGTAATGAGGGAAGCCAACAATGTTGGAGGCAACCAGAACTATATGAAGACTCTCCAAGCAGTTCTGAATACAGCACAGGATCAACGCTTCTGCCCCATTCAGCAAGTGATAATCTGGAACACTCTCTGCTTCAGGATATTGGAACTGATCTAAAGCCTATCCAAGTTGGAGATCAAAAAGTTGTTAGTGAATGTGGGAAAGAGGATCTCTCTTCTGCAACTGTAGGTCAAGTGGCAGATGTGTTTCCATCTTGTGAGGAACAGCTAAGCAATGATGGGATTGCTTCTACCTCATCAAGCACAGAGTTCAATTCCCCCCTTCAAGTTACCCCTCTGTTCAGATCTTTGGCTGCAGGAATTCCCAGCCCACAGTTTTCAGAAAGTGAAAGAAACTTCCTGATGAGGACGCTTGGATTGGAGTCCCCATCCATGAACCCAAGTGCCAACCCCTCACAACCACCACCCTGCAAAAGAGCCCTACTAAACAGTCTATAA 1503 0.4258 MFRPSFIAQSKEGASYKESLTITINPSSAERDMRKLKQQLGKQEESQKKERHIVTWTQEEDDTLRKQISIHGTENWAIIASNFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDLLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKFEALAKENNTSFINSNNKRTIFQQGDNRESTSEAEPPAKKMRRAHIPDAAEKINYGHRSHKHYEATIKQQPRALFSILAQNLPDQHEASNDKISRNAHDSKTRGTFLEEYDPKISMLMQQAELLSSLTLKVNTDDVDQSLEDAWKVLQEFLNQTKESDILKYKISDLQLVDLKYMMEEFKSSNEGSQQCWRQPELYEDSPSSSEYSTGSTLLPHSASDNLEHSLLQDIGTDLKPIQVGDQKVVSECGKEDLSSATVGQVADVFPSCEEQLSNDGIASTSSSTEFNSPLQVTPLFRSLAAGIPSPQFSESERNFLMRTLGLESPSMNPSANPSQPPPCKRALLNSL 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g0842 500 SUPERFAMILY Homeodomain-like 52 146 IPR009057 -
Acco12g0842 500 Pfam Myb-like DNA-binding domain 56 115 - -
Acco12g0842 500 CDD SANT 108 149 IPR001005 -
Acco12g0842 500 SMART sant 104 152 IPR001005 -
Acco12g0842 500 SMART sant 52 101 IPR001005 -
Acco12g0842 500 FunFam Transcription factor MYB124 48 104 - -
Acco12g0842 500 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 48 99 IPR017930 -
Acco12g0842 500 PANTHER MYB PROTEIN-RELATED 55 201 - -
Acco12g0842 500 MobiDBLite consensus disorder prediction 475 500 - -
Acco12g0842 500 Gene3D - 107 185 - -
Acco12g0842 500 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 100 154 IPR017930 -
Acco12g0842 500 ProSiteProfiles Myb-like domain profile. 56 99 IPR001005 -
Acco12g0842 500 Gene3D - 43 104 - -
Acco12g0842 500 CDD SANT 55 99 IPR001005 -
Acco12g0842 500 ProSiteProfiles Myb-like domain profile. 100 150 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g0842 Acco-ChrAcco12 8246139 8251448 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g0842 94 500 MYB Transcription Factor Family AT1G14350 51.951 6.29e-134 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Acco12g0842 Myb_DNA-bind_6 1.8e-14 CL0123