Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g0839 ATGGGAGTTTGTTTAAGCACGAATTCTCTGGATCCCAATCACGAACCCAACCAACCCTGCGATAATATAGTTCATTCTCCTAATGGAAGACATGCCCACGTGGGAAGACCATGGATCCTCAATGAACGGAAGAATCTGTTTGTTGTTTCAGACAATCACAGAGGAAGGAGGAAGAGAGATGAAAAGAATAAATCTATAGCTAACCCGAGGGGTTTGCATGCTCTGAAAGTAGACAAGTTAAGAGCTCAAATTCGCAATAAGCTCAAAGAGTTCTCTTATAAAGACATGGAAGATGCCACACGCAGGTTCAGAACTAAGAACTTGATTGGCCGAGGAGGTTTTGCCGATATTTATAAGGGATATCTATCACACCACACCATGAATGCTGCAAAACCAAATGAAGGATTCCCCATTGCTGTTAAGAGAATAAGAAGGCCTGGATCAGGACGACACAGAGAATGGCTGAATGAAATAATATATTTGACCAAAATTAGCCATCCGAACGTGGTGAATCTAATAGGTTATTGCCGTGAGGGTCACCATAGAATGCTTGTGATTGAGTTCATGGTTGAAGGAAGCTTGGAGGACCATCTCTTGAAAGGCAATAGAGAGCCAAACTGGAATAGAAGAATTAACATTGCACTGGGGACTGCAAGGGCTTTAGACTTTCTTCACAGCTATGAAACGCCAGTAATTCATCGTGATGTTAAGTCTTCCAACATCCTACTAGATGATGTGAGCCGCTTAAAATTGATGCTTAAACTCTCTCTACTACGTATCTCTTCAGATAGCAACCTTTCGTTTTTCATATTATCCGACTGCGTAAGAATGATGATATTGCAGAACTTCAATGCAAAGCTCTCTGACTTCGGACTGGCTAGAGATGGACCTGAAGAAGATGACCAGTCCCATGTTTCCTCAAGAATCCTTGGCACTAGAGGCTATTTCGCCCCTGAGTACATAGCCACAGGGCATTTAACTCTAAAAGTTGATGTTTATAGCTTTGGAGTGGTTCTACTAGAGATATTATCAGGCTCTGCTGCAGTTAGGAAACATTCAGATGGGGTGGTGGGGAATCTTGCCCAGTGGGCTGAACCATTTTTAAGTGACAAAAATGAACTTCACCGAGTTATAGACAAGAGACTAGGACAAAATTTTCCTATGGAAGCAGCCTATGAGTTGGCTCAACTAATCCTAAATTGCCTCTGCTTAAACCCCAAACATCGCCCAACAATGGCTGAGGTTGTTGCTGCCTTGGAACAGATAGAGCTACACATAGGATTTCATTATAAGAGAATGTTTAACGGAAGAACTATAACTCATTTTTTACCTGCAAATATGAACAAGAAACAGGACAAAAGGAAAAAAGAAACTACGGCGGAATTATACTTACATATAGATTGTGGAAAGAAGGTAGCAATATTCTATTGA 1431 0.4123 MGVCLSTNSLDPNHEPNQPCDNIVHSPNGRHAHVGRPWILNERKNLFVVSDNHRGRRKRDEKNKSIANPRGLHALKVDKLRAQIRNKLKEFSYKDMEDATRRFRTKNLIGRGGFADIYKGYLSHHTMNAAKPNEGFPIAVKRIRRPGSGRHREWLNEIIYLTKISHPNVVNLIGYCREGHHRMLVIEFMVEGSLEDHLLKGNREPNWNRRINIALGTARALDFLHSYETPVIHRDVKSSNILLDDVSRLKLMLKLSLLRISSDSNLSFFILSDCVRMMILQNFNAKLSDFGLARDGPEEDDQSHVSSRILGTRGYFAPEYIATGHLTLKVDVYSFGVVLLEILSGSAAVRKHSDGVVGNLAQWAEPFLSDKNELHRVIDKRLGQNFPMEAAYELAQLILNCLCLNPKHRPTMAEVVAALEQIELHIGFHYKRMFNGRTITHFLPANMNKKQDKRKKETTAELYLHIDCGKKVAIFY 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g0839 476 PANTHER OS01G0588500 PROTEIN-RELATED 65 423 - -
Acco12g0839 476 SMART serkin_6 103 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco12g0839 476 ProSiteProfiles Protein kinase domain profile. 103 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco12g0839 476 Pfam Protein tyrosine and serine/threonine kinase 105 419 IPR001245 GO:0004672|GO:0006468
Acco12g0839 476 Gene3D Phosphorylase Kinase; domain 1 82 188 - -
Acco12g0839 476 SUPERFAMILY Protein kinase-like (PK-like) 87 433 IPR011009 -
Acco12g0839 476 Gene3D Transferase(Phosphotransferase) domain 1 189 433 - -
Acco12g0839 476 ProSitePatterns Protein kinases ATP-binding region signature. 109 141 IPR017441 GO:0005524
Acco12g0839 476 ProSitePatterns Serine/Threonine protein kinases active-site signature. 231 243 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g0839 Acco-ChrAcco12 8222761 8225572 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g0839 38 419 Glycoside Hydrolase AT3G07070 36.896 2.48e-69 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Acco12g0839 PK_Tyr_Ser-Thr 7.2e-45 CL0016