Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g0829 ATGGAGTATTTTAGTATTCGGGACGAAGAAATCAAACAGAACCTTAGCCGCGAAAGCCAAGGGGGACGAGAAAGGACTAGCGGCAATAATCCAAAGATGTCGCAGCTTCACTGTCTATCTTCTTCTTCGTCACTCACCGCACAGTATTCCATTCAACTCTGCCCTACCCACAGTTTCTATCCAAAGAAGCCCCTTTCTTCTCGCCCTTCTTCAACGCCCAGCAGCTCCAACTTCTCCCTCACCCTCCCATCCTCTCGCACAAACCCCTTTTCTATCAAATGCCGCCAATCCGAGTACTTCGAACAACAAAGCTTCTCCAAACCCATAAGAAATGCAAACGGTAACGATGCAGTTGGAGCTGTGCCACTGCCGCCTAAGGTTTATGTGGGTCACTCGGTTTACAAAGGGAAGGCTGCTCTTAAGGTGTTTCCCAGGCCTCCAGAGTTTGCGCCATTGGAGTCTGGAGCATTCAAAGTGTCTAAGGAAGGTTATCTGCTGCTTGAGTTTGCTCCTGGAGTTGGTATGCGCCAGTATGACTGGAACAGAAAGCAGATATTCTCTCTATCAGTGAGTGAAATGGGAAATCTAATTAGCCTTGGTGCAAGGGATTCGTGTGAATTTTTTCATGATCCTTTTAAGGGGAGGAGTGATGAAGGTAAAATCAGAAAAGTTTTGAAGGTAGAGCCACTTCCGGATGGTTCTGGTCACTTTTTTAACCTAAGTGTTCAAAACAAGACTGAGAACTTGGATGAAAGCATCTATATCCCTATTACAAAAGCAGAGCTATCAGTTTTCCGCTCAATTTTCAATTATATCACGCCATACCTTCTGGGTTGGCATGCGTTTGCAAATTCTATTAAACCAGATGATAAGAGCCGATACAATCCAAAATTTGGAGACTATGAATGGAGCAGATAG 918 0.4488 MEYFSIRDEEIKQNLSRESQGGRERTSGNNPKMSQLHCLSSSSSLTAQYSIQLCPTHSFYPKKPLSSRPSSTPSSSNFSLTLPSSRTNPFSIKCRQSEYFEQQSFSKPIRNANGNDAVGAVPLPPKVYVGHSVYKGKAALKVFPRPPEFAPLESGAFKVSKEGYLLLEFAPGVGMRQYDWNRKQIFSLSVSEMGNLISLGARDSCEFFHDPFKGRSDEGKIRKVLKVEPLPDGSGHFFNLSVQNKTENLDESIYIPITKAELSVFRSIFNYITPYLLGWHAFANSIKPDDKSRYNPKFGDYEWSR 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g0829 305 MobiDBLite consensus disorder prediction 1 36 - -
Acco12g0829 305 Pfam Whirly transcription factor 133 268 IPR013742 GO:0003697|GO:0006355|GO:0006952
Acco12g0829 305 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 88 305 IPR013742 GO:0003697|GO:0006355|GO:0006952
Acco12g0829 305 MobiDBLite consensus disorder prediction 63 83 - -
Acco12g0829 305 MobiDBLite consensus disorder prediction 20 36 - -
Acco12g0829 305 Gene3D Transcriptional Coactivator Pc4; Chain A 120 292 IPR009044 GO:0003677|GO:0006355
Acco12g0829 305 SUPERFAMILY ssDNA-binding transcriptional regulator domain 125 304 IPR009044 GO:0003677|GO:0006355
Acco12g0829 305 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g0829 Acco-ChrAcco12 7935335 7938466 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g0829 78 305 Whirly Transcription Factor Family AT1G14410 64.224 1.27e-106 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Acco12g0829 Whirly 8.2e-59 CL0609