Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g0825 ATGAACAGAAATATTACCTTATTTTCATTCTTTTTATTGATCTGCTGGGTAGTCATTCCTACCCTCCATGCAAATGTATTAGAGGATGAAACTTTTTGGAAAGAGCATTCAGGTGAATTTAATCAGTATTGGCATCAAAGAGCCAACGACGCTGAGAAGGCCAACAAGGAAGAATATCAACATAACCCCTATGAAGTCGTAGGCAACATCACCGCTAGTGTTGATAGGATGCTGCTTGGCACAGGGCATGAAGGAAGGAGCTTGCGACAACGTGGTCCTTACACTGGTCCATGCATGGCCACCAACCCAATTGACAGGTGCTGGAGATGCGACCCCAACTGGGAGAAAAACCGACAGAAGTTGGCTGATTGTGCTCTAGGATTTGGCAAAGGCACAACTGGTGGAAAGGGTGGTGCATACTATGTGGTAACAGATCCCTCAGATAATGACTTGATTAACCCCAAAATTGGTACCCTTAGGCACGCAGTTACAAGGACCGGTCCCTTGTGGATTATCTTTGCACGCAGCATGGTGATTAGGCTGCAGCAGGAGCTAATCATGACTGGGGATAAGACGATTGATGGCAGAGGAGCTATGGTTGTAATCACAGGAGGAGCTGGCATTACCATCCAGTTTATCAAGAATGTGATCATTCACAACATTAAGGTCCTCAACATTCAGTCTACCAGTGGTGGATTGATCAGAGATAGTGAACAACATTATGGTTTGAGGACTAGAAGCGATGGTGATGGGATTTCAATCTTTGGCTCCAGCAAAGTCTGGATTGATCATGTTTCTATGAGCAATTGCGGTGATGGACTCATAGATGCTATCATGGGATCCACTGCCATCACCATCTCCAATAGCCATTTCACAAAGCACAATGAGGTGATGTTGTTTGGCGCCAGTGACAGCTATGCAGGAGACCAGATTATGCAAATCACCGTGGCGTTCAATCACTTTGGACGGGGATTAATCCAAAGGATGCCAAGGAGCAGGTGGGGTTTCGTTCATGTGGTTAACAATGACTACACGCACTGGGAAATGTACGCCATTGGCGGCAGCATGCATCCTACCGTCATCAGTGAGGGTAATAGATTCATAGCCCCGAATAACAACTTTGCCAAAGAGGTTACAAAGAGAGAGTACTCACCGGAAAGCGTGTGGAAGAACTGGCAATGGAGATCAGTGAATGACCTACTCATGAACGGAGCTACATTCATAGAATCTGGGACTGGTCTTCCAGTGTCAACGCGTGACAAGCTCAAGGGCAAGCCTGGATCATATGTGTCAAGACTCACACGCTTCTCCGGAATAATCAGGTGCCATGTGGGTAAGCCCTGCTAA 1347 0.464 MNRNITLFSFFLLICWVVIPTLHANVLEDETFWKEHSGEFNQYWHQRANDAEKANKEEYQHNPYEVVGNITASVDRMLLGTGHEGRSLRQRGPYTGPCMATNPIDRCWRCDPNWEKNRQKLADCALGFGKGTTGGKGGAYYVVTDPSDNDLINPKIGTLRHAVTRTGPLWIIFARSMVIRLQQELIMTGDKTIDGRGAMVVITGGAGITIQFIKNVIIHNIKVLNIQSTSGGLIRDSEQHYGLRTRSDGDGISIFGSSKVWIDHVSMSNCGDGLIDAIMGSTAITISNSHFTKHNEVMLFGASDSYAGDQIMQITVAFNHFGRGLIQRMPRSRWGFVHVVNNDYTHWEMYAIGGSMHPTVISEGNRFIAPNNNFAKEVTKREYSPESVWKNWQWRSVNDLLMNGATFIESGTGLPVSTRDKLKGKPGSYVSRLTRFSGIIRCHVGKPC 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g0825 448 SUPERFAMILY Pectin lyase-like 102 419 IPR011050 -
Acco12g0825 448 Gene3D - 101 441 IPR012334 -
Acco12g0825 448 SMART amb_all 176 373 IPR002022 -
Acco12g0825 448 Pfam Pectate lyase, N terminus 38 81 IPR007524 GO:0030570
Acco12g0825 448 PANTHER PECTATE LYASE 18-RELATED 51 446 IPR045032 GO:0030570
Acco12g0825 448 Pfam Pectate lyase 191 367 IPR002022 -
Acco12g0825 448 PRINTS Pollen allergen Amb family signature 328 347 IPR018082 -
Acco12g0825 448 PRINTS Pollen allergen Amb family signature 392 416 IPR018082 -
Acco12g0825 448 PRINTS Pollen allergen Amb family signature 248 269 IPR018082 -
Acco12g0825 448 PRINTS Pollen allergen Amb family signature 184 200 IPR018082 -
Acco12g0825 448 PRINTS Pollen allergen Amb family signature 350 369 IPR018082 -
Acco12g0825 448 PRINTS Pollen allergen Amb family signature 124 141 IPR018082 -
Acco12g0825 448 PRINTS Pollen allergen Amb family signature 148 173 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g0825 Acco-ChrAcco12 7902226 7903994 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g0825 7 448 Polysaccharide Lyase AT2G02720 56.863 0.0 520