Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g0812 ATGGAATCACAGTTGAGTCTGATAGACCAATCAATCGACAGTCATTACTCCTGCCATGTTCGCGAGGCGCTCGACGAATTGCCTGACAATTTTGTCATCACCGACCCCTCTATCTCTGGCCACCCGATTGTTTTTGCGAGCCACGGGTTCTTGAAAATGTCAGGGTATTCCAAAGAAGAGGTTATTGGCAAGAATGGCAAGATTTTTCAAGGACCAGGGACTTGTAGAAGATCGGTAATAGAAATTCGTGAGGCGATAAGAGAAGAGAGATCTTTTCAGATCAATTTGTTGAATTATCGTAAAGATGGCAAGCCTTTTTGGGTTTTGTTTCACATGAACCCTGTATTTAACAAGTATGATGGGAGGGTGAGTCACTTCGTGTCAGTTCAGGTACCCCTATCAAGGAAACGGAGGCGGTCGGGATGCGGCGTTAGGAGAACTAACGTTAATTTGAGCGACGATGGGTCTATGGCTCAGGATTTTGTGTATGGATCGTGTCGGAAGGAAGTGTGCTCGGATTCTTTGTTGGAACTTGGTCGGGTTCTGTCTCTTCATCAAGTGTCAGAAGTAGAACATGATGGTAGAGAACCAAATAGTGAAGAACTGTGTGAGGCAAGTGATGTTGATAAGAGAAAAACTATGACTGCAATGGACAACATTTTTTCTGTGCTAACCCACTATAGTGAGTTGACTGGGAGATTGGTATGTAGAAAGAGATGCAGTTTTTCTGACGTGGGAGTTCTTAGCTCATCCTTGATTATATCTCTTGGTAGAATCAAACAAAGCTTTGTATTAACTAATCCTCGTTTACCTGATATGCCTATTGTGTATGCCAGTGATGCCTTCTTGAAATTGACAGGTTATGTAAAAGATGAAGTGCTGGGACGCAACTGTAGATTTCTAAGTGGACTGAATACTGATTCCTCAGCTTTATATTTGATTAGGGAGAGCATTAATGCTGAACAACCATGCACAGTACGTATTTTGAATTACAGGAAGGATGAAAGCCCATTTTGGAATTTTCTACACATATCACCTATTCGTGATGCCTTTGGCAAGATAGCATATTTTGTGGGGGTTCAAATAGAGGAAGGCTGTGAGAACAAGCAAGGCAGACAGGGAATGAGCCCTGAGAAGATTCAGCTGAGCGTGGTGGGAGCAGTGAGGATTGGTGTGAGGAGTTCATCATTGACTGCTGGATCTTCCAAGTCATACACATGA 1221 0.43 MESQLSLIDQSIDSHYSCHVREALDELPDNFVITDPSISGHPIVFASHGFLKMSGYSKEEVIGKNGKIFQGPGTCRRSVIEIREAIREERSFQINLLNYRKDGKPFWVLFHMNPVFNKYDGRVSHFVSVQVPLSRKRRRSGCGVRRTNVNLSDDGSMAQDFVYGSCRKEVCSDSLLELGRVLSLHQVSEVEHDGREPNSEELCEASDVDKRKTMTAMDNIFSVLTHYSELTGRLVCRKRCSFSDVGVLSSSLIISLGRIKQSFVLTNPRLPDMPIVYASDAFLKLTGYVKDEVLGRNCRFLSGLNTDSSALYLIRESINAEQPCTVRILNYRKDESPFWNFLHISPIRDAFGKIAYFVGVQIEEGCENKQGRQGMSPEKIQLSVVGAVRIGVRSSSLTAGSSKSYT 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g0812 406 SMART pac_2 93 136 IPR001610 -
Acco12g0812 406 SMART pac_2 325 364 IPR001610 -
Acco12g0812 406 CDD PAS 271 360 IPR000014 -
Acco12g0812 406 NCBIfam PAS domain S-box protein 21 124 IPR000014 -
Acco12g0812 406 NCBIfam PAS domain S-box protein 275 360 IPR000014 -
Acco12g0812 406 SUPERFAMILY PYP-like sensor domain (PAS domain) 265 361 IPR035965 -
Acco12g0812 406 Gene3D PAS domain 18 141 - -
Acco12g0812 406 ProSiteProfiles PAS repeat profile. 275 297 IPR000014 -
Acco12g0812 406 CDD PAS 27 130 IPR000014 -
Acco12g0812 406 FunFam Protein TWIN LOV 1 isoform D 30 226 - -
Acco12g0812 406 Pfam PAS domain 263 361 IPR000014 -
Acco12g0812 406 Pfam PAS domain 40 131 IPR000014 -
Acco12g0812 406 ProSiteProfiles PAS repeat profile. 16 65 IPR000014 -
Acco12g0812 406 SMART pas_2 18 87 IPR000014 -
Acco12g0812 406 SMART pas_2 250 323 IPR000014 -
Acco12g0812 406 PANTHER PROTEIN TWIN LOV 1 1 394 - -
Acco12g0812 406 SUPERFAMILY PYP-like sensor domain (PAS domain) 28 130 IPR035965 -
Acco12g0812 406 Gene3D PAS domain 262 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g0812 Acco-ChrAcco12 7798146 7801603 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g0812 248 372 AGC Kinase Gene Family AT5G58140 40.769 2.54e-27 112