Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g0808 ATGGCTAGTCCTAAGCTCTTTGCTCCCTCAAATCTCACAGCTTTTCTTCAAAACGAAAGCCTTCCCTCTCCTCCTACTCCTCCTCCTCCTCATGTTCTTGACTCTTTCTTGTTTCACCACTCTGATCCCTCCTTTCAAGGTTCAAAACGTCTGATTGATTTCGAGAATGTTAGTGGAAGTACAATATCAGAATTTCCATTCTTCCAAGGTCTGGACAAAGAAGAGAACAACGCAGAAGAGGAATACGATGCGTACTTTCATCAAGCAGGGAAGAAGAGGAGGCTCACATGCCAACAAGTTCAGCTCTTGGAGAAACACTTCGAGGTAGAAAACAAGCTCGAACCAGAAAGAAAAGTTCAACTCGCCAAAGAACTCGGATTGCAGCCAAGACAAGTCGCTATTTGGTTCCAGAACCGACGCGCCCGGTTCAAGACCAAACAGCTCGAAAAAGACCATACCGCCTTAAAATCTAGCTATGACAAACTCAAAGGTGAATATGACAATCTTCTTCAACACAACAAGAAGTTAAAAGAAGAGGTGGATTCTCTGAAGAACAGGTTGAAAGGGAGAGATCAAAAAGAGAAAGAAGAGAATTGTGTTGATGTTTTGATCTCAGATAATAATGATGGGATTTCTGAAAATGGGTCAAAAATTGAAAAGGTTCCTTCTACAGTGGTAATGTGCAAACAAGAAGATGCTAATTCTACTAAAAGTGATGTGTTTGATTCTGATAGCCCACACCACACTGCAGATTCGTCTCATGCCTGCAACGAAGCAGAGCACTCAGATTTCTCACAGGATGAAGAAGACCACAACAACAACAACCTCTTGAGTCTCCCATACTTATTACCCAAGGTTGAAGAAGAGCCCTCTAACTTTGGTTTCCCACCATATGAAGATCAACCCTTCTATTTTTGGTCTTATTAA 927 0.4186 MASPKLFAPSNLTAFLQNESLPSPPTPPPPHVLDSFLFHHSDPSFQGSKRLIDFENVSGSTISEFPFFQGLDKEENNAEEEYDAYFHQAGKKRRLTCQQVQLLEKHFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARFKTKQLEKDHTALKSSYDKLKGEYDNLLQHNKKLKEEVDSLKNRLKGRDQKEKEENCVDVLISDNNDGISENGSKIEKVPSTVVMCKQEDANSTKSDVFDSDSPHHTADSSHACNEAEHSDFSQDEEDHNNNNLLSLPYLLPKVEEEPSNFGFPPYEDQPFYFWSY 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g0808 308 Pfam Homeobox associated leucine zipper 146 187 IPR003106 GO:0006355|GO:0043565
Acco12g0808 308 SUPERFAMILY Homeodomain-like 82 148 IPR009057 -
Acco12g0808 308 PRINTS Lambda-repressor HTH signature 126 142 IPR000047 GO:0003677
Acco12g0808 308 PRINTS Lambda-repressor HTH signature 117 126 IPR000047 GO:0003677
Acco12g0808 308 FunFam homeobox-leucine zipper protein ATHB-6-like 94 140 - -
Acco12g0808 308 CDD homeodomain 91 147 IPR001356 GO:0003677
Acco12g0808 308 MobiDBLite consensus disorder prediction 235 270 - -
Acco12g0808 308 Coils Coil 145 193 - -
Acco12g0808 308 SMART HOX_1 89 150 IPR001356 GO:0003677
Acco12g0808 308 ProSiteProfiles 'Homeobox' domain profile. 86 146 IPR001356 GO:0003677
Acco12g0808 308 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 72 257 IPR045224 GO:0003700
Acco12g0808 308 Pfam Homeodomain 91 144 IPR001356 GO:0003677
Acco12g0808 308 Gene3D - 86 154 - -
Acco12g0808 308 ProSitePatterns 'Homeobox' domain signature. 121 144 IPR017970 GO:0000981|GO:0006355
Acco12g0808 308 MobiDBLite consensus disorder prediction 235 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g0808 Acco-ChrAcco12 7744632 7745808 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g0808 91 247 Homeobox Transcription Factor Family AT3G01470 50.000 1.09e-42 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Acco12g0808 Homeodomain 7.3e-16 CL0123