Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g0753 ATGAGCTCCAAATCACTCTTTCACAACACAAACAGGAGCCCCATTTCGTTCATCATGAACTTTATCTTTCTCACTGCTTCGATCTTTCTCCTTTATTCATCACCGTTTGGTGTTTCCATCGCGGACGACGTGGTTTGCCTCCAAGGTGTGAAAAGCTCATTTTCCGACCCAAATGGAAAACTCAGCTCCTGGAGCTTTACCAACACTTCTGTGTCCTCAATCTGCCAGCTTGTCGGAGTTTCTTGCTGGAACGAGAAGGAGACCCGCATCATTAGCCTCCAGCTCCGTGACATGCAGCTCGCCGGAAAACTCCCTGAATCGCTCAAGTATTGCCGGAGCCTACAGACCCTCGAACTCTCCGGTAATGCTCTCTCCAGTTCGATCCCTCCTTATATCTGTAGCTGGTTGCCTTATTTGGTGACCTTAGATCTCTCCGGTAACCAAATCTCGGGTTCAATCCCACCCGAGATTGTGAATTGCAAGTTCCTGAATACTCTTATTCTGAACGATAACAAATTATCGGGTTCGATCCCTTACGAACTGGGTCGGCTTGACCGATTGAAGAGGCTCTCTGTTGCCAACAACGATCTCTCAGGTTCTATTCCACCGGATTTGTCCAAATTTGACGCGGCTGATTTTGATGGGAACGGTGGATTATGCGGGAAGCCTACTGGATCAAAGTGTGGTGGATTGAGTCGCAAAAGTCTCGGGATTATTATTGCAGCTGGTGCGATTGGAGCCTTGGGATCTTTAGTTGTGGGTTTCGCTCTCTGGTGGTGGTTTTTCCTGAGAGTCAGCGAGCAAAAGAAAGAGTACAGTGGTTCTGGTGGTGGAAAGCAAGTGGGTGACTGGATTGATTTGTTAAAGTCACACAAGCTTGCTCAAGTTTCTTTGTTCCAGAAACCCATAGTGAATGTCAGATTAGCTGATTTGCTACTAGCCACTAATAGCTTTCATCCAGAAAATATTGTGATTTCTAGTAGAACAGGAGTATCTTATAAGGCAGTTCTGCGTGATGGGTCAGCTCTTTCTGTGAAGAGGCTTAATTCTTGTAAACTTGGTGAGAAGCAATTTAAATCAGAGATGAACAGGTTGGAGCAGCTCAGACACCCCAATTTGGTACCTCTATTGGGTTTCTGTGTGGTGGAAGAAGAGAAGCTTTTGGTGTACAAGCACATGTTCAATGGGACCTTGCATTCTCAGTTGCATAAAAATGGTCAAGCTAATAATAGTCAATATAGTTTTCTGGATTGGCCAGCCAGGCTGAGAATTGGGACAGGTGCTGCTAGAGGACTTGCTTGGCTTCACCATGCTTGTCAACCTCCCTATATTCATCAGAACATCAGCTCAAATATAATCCTTCTTGACTATGATTTCGAAGCTCGAATAACAGATTTCGGATTGGCGAGGCTCGTGGTTAATCGGGATCCCAATGATAGCTCCTTTGTGAATGGTGATCTGGGTGAATTTGGTTATGTTGCTCCTGAGTACTCAAGCACCATGGTTGCTTCCTTGAAAGGTGATGTTTATGGTTTTGGAGTTGTTCTCTTGGAATTGGTCACCGGGATGAAGCCGGTTGAAGTTTACACTGGAGGGGAAGGATTCAAAGGGAATTTAGTGGACTGGATCAATTGGTTAACCGTGACAGGAAGAACTAAAGAAGCCATAGATAAAGCTTTGTTAAATGAGAACCCTGAACATGGTGATGAATTTATGCAGTTCATGAAGGTTGCCTTATCTTGTGTTGTTTCTAGACCTAAAGATAGACCTTCCATGTACCAAGTTTTCTCCTCACTGAAGAGCATGGCTGAGAAACATGGTTTTGCAGATCCGTATGATGACTTCCCAGTTGTCTCTGGCAAAGAAGACTCTGACTACAATAAGAATTAG 1890 0.4471 MSSKSLFHNTNRSPISFIMNFIFLTASIFLLYSSPFGVSIADDVVCLQGVKSSFSDPNGKLSSWSFTNTSVSSICQLVGVSCWNEKETRIISLQLRDMQLAGKLPESLKYCRSLQTLELSGNALSSSIPPYICSWLPYLVTLDLSGNQISGSIPPEIVNCKFLNTLILNDNKLSGSIPYELGRLDRLKRLSVANNDLSGSIPPDLSKFDAADFDGNGGLCGKPTGSKCGGLSRKSLGIIIAAGAIGALGSLVVGFALWWWFFLRVSEQKKEYSGSGGGKQVGDWIDLLKSHKLAQVSLFQKPIVNVRLADLLLATNSFHPENIVISSRTGVSYKAVLRDGSALSVKRLNSCKLGEKQFKSEMNRLEQLRHPNLVPLLGFCVVEEEKLLVYKHMFNGTLHSQLHKNGQANNSQYSFLDWPARLRIGTGAARGLAWLHHACQPPYIHQNISSNIILLDYDFEARITDFGLARLVVNRDPNDSSFVNGDLGEFGYVAPEYSSTMVASLKGDVYGFGVVLLELVTGMKPVEVYTGGEGFKGNLVDWINWLTVTGRTKEAIDKALLNENPEHGDEFMQFMKVALSCVVSRPKDRPSMYQVFSSLKSMAEKHGFADPYDDFPVVSGKEDSDYNKN 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g0753 629 CDD STKc_IRAK 326 602 - -
Acco12g0753 629 Gene3D Transferase(Phosphotransferase) domain 1 393 614 - -
Acco12g0753 629 Pfam Leucine Rich repeat 110 125 IPR001611 GO:0005515
Acco12g0753 629 Pfam Leucine Rich repeat 137 151 IPR001611 GO:0005515
Acco12g0753 629 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 393 607 - -
Acco12g0753 629 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 83 601 - -
Acco12g0753 629 Pfam Leucine rich repeat N-terminal domain 41 83 IPR013210 -
Acco12g0753 629 Gene3D Phosphorylase Kinase; domain 1 279 392 - -
Acco12g0753 629 Gene3D Ribonuclease Inhibitor 42 230 IPR032675 -
Acco12g0753 629 SUPERFAMILY L domain-like 40 216 - -
Acco12g0753 629 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 40 229 - -
Acco12g0753 629 Pfam Protein tyrosine and serine/threonine kinase 344 598 IPR001245 GO:0004672|GO:0006468
Acco12g0753 629 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 279 392 - -
Acco12g0753 629 ProSiteProfiles Protein kinase domain profile. 318 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco12g0753 629 SUPERFAMILY Protein kinase-like (PK-like) 296 599 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g0753 Acco-ChrAcco12 7153747 7155636 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g0753 21 624 Receptor kinase-like Gene Family AT1G27190 65.563 0.0 791
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Acco12g0753 PK_Tyr_Ser-Thr 5.4e-30 CL0016