Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Acco12g0732 | ATGCCGACGGATAGATCAAAATCGGAGAAGCGCGACGCTGCGACGCAGCTCGGACGGGATCCCTATGAGGTTCTAGGCCTCTCGCGGAACTCAACAGATCAAGAAATTAAAACTGCTTACCGGAAATTGGCACTCAAATATCATCCTGACAAGAATGCTAATGATCCTAAAGCAGCGGATATGTTCAAGGAGGCCACCTTTTCATATAACATCCTGTCAGATCCTGAAAAACGCCATCAGTACGACTCTGATGGTTTTGAGGGTGTTGAATCAGATAACCAACACTTAGAAATGGATCTTTCGAGTTTAGGTGCTGTGAATACAATGTTTGCAGCACTTTTTAGTAAACTTGGGGTGCCTATTAAGACAACTGTATCAGCAACTGTTTTGGAGGAGGCACTTAAAGGGACAGTGATCATTCATCCACTTCCACTGGGGATGCCTATATCTAAAAGGGTTGAGAAGCAATGTGCTCACTTTTATTCAGTTACATTATCAGAAGAAGAAGCGCAAGATGGATTTGTTTGCCATGTACAATCATCAGGCAAAAGCAAGTTCAAGTTACTATATTTTGATCAAGAAGAGACTGGTGGACTAAGTCTCGTGCTCCAGGAAGACGGTGCAAAAACAGGGAAGGTAACGTCTGCGGGAATATATTTTCTTGGGTTTCCTGTTTATCAATTGGATCAAACCATAAATTCAACAGCTGCTGTTAAGGATCCTGATGCATCATTTTTCAGAAAGCTAGATGGATTCCGACCATGTGAAGTAACAGAACTAAAGGCTGGTACTCATGTATTTGCCGTTTATGGCGACAATTTTTTCAGAAGTGCAAGCTACGCTATAGAAGCTTCATGTGCCGCGCTTTTTAGTCAAGAGAAAGAAAATCTCAGAAGTGTAGAAGCCCAAATTTTATCTAAAAGGGCAGGCCTAACAACGTTTGAGTCTGAATACCGAGAGGTTCTGGCACAATTTACAGAGATGACAAGTAGATATACACAAGAAATGCAAGCGATTGATGAGCTACTTAAGCAGAGGAATGAACTACGTGCATCATATACTGTTGCTCCATTAAAACGAAGTAGAACAAAGAGGAGTACAAGTTCTTGCAAGAAGGAAGAAGGAGAAGATGGCCAAGCAAGAGAGAAGAGACATACAGGGGAGCGATTGAGGAAGAAGAAATGGTATAACATCCACTTAAAAGCTGACAAGAGAAAAGCTTGCTAG | 1227 | 0.4189 | MPTDRSKSEKRDAATQLGRDPYEVLGLSRNSTDQEIKTAYRKLALKYHPDKNANDPKAADMFKEATFSYNILSDPEKRHQYDSDGFEGVESDNQHLEMDLSSLGAVNTMFAALFSKLGVPIKTTVSATVLEEALKGTVIIHPLPLGMPISKRVEKQCAHFYSVTLSEEEAQDGFVCHVQSSGKSKFKLLYFDQEETGGLSLVLQEDGAKTGKVTSAGIYFLGFPVYQLDQTINSTAAVKDPDASFFRKLDGFRPCEVTELKAGTHVFAVYGDNFFRSASYAIEASCAALFSQEKENLRSVEAQILSKRAGLTTFESEYREVLAQFTEMTSRYTQEMQAIDELLKQRNELRASYTVAPLKRSRTKRSTSSCKKEEGEDGQAREKRHTGERLRKKKWYNIHLKADKRKAC | 408 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Acco12g0732 | 408 | FunFam | Chaperone protein dnaJ 16 | 4 | 102 | - | - | |
| Acco12g0732 | 408 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
| Acco12g0732 | 408 | Pfam | DnaJ domain | 20 | 82 | IPR001623 | - | |
| Acco12g0732 | 408 | SMART | dnaj_3 | 19 | 77 | IPR001623 | - | |
| Acco12g0732 | 408 | MobiDBLite | consensus disorder prediction | 356 | 390 | - | - | |
| Acco12g0732 | 408 | SUPERFAMILY | Chaperone J-domain | 19 | 95 | IPR036869 | - | |
| Acco12g0732 | 408 | PRINTS | DnaJ domain signature | 40 | 55 | IPR001623 | - | |
| Acco12g0732 | 408 | PRINTS | DnaJ domain signature | 22 | 40 | IPR001623 | - | |
| Acco12g0732 | 408 | PRINTS | DnaJ domain signature | 57 | 77 | IPR001623 | - | |
| Acco12g0732 | 408 | PRINTS | DnaJ domain signature | 77 | 96 | IPR001623 | - | |
| Acco12g0732 | 408 | Gene3D | DnaJ domain | 4 | 105 | IPR036869 | - | |
| Acco12g0732 | 408 | MobiDBLite | consensus disorder prediction | 367 | 385 | - | - | |
| Acco12g0732 | 408 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
| Acco12g0732 | 408 | CDD | DnaJ | 20 | 74 | IPR001623 | - | |
| Acco12g0732 | 408 | Coils | Coil | 332 | 352 | - | - | |
| Acco12g0732 | 408 | ProSiteProfiles | dnaJ domain profile. | 20 | 85 | IPR001623 | - | |
| Acco12g0732 | 408 | ProSitePatterns | Nt-dnaJ domain signature. | 62 | 81 | IPR018253 | - | |
| Acco12g0732 | 408 | PANTHER | DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN) | 5 | 407 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Acco12g0732 | Acco-ChrAcco12 | 6842572 | 6845463 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Acco12g0732 | 22 | 83 | C2H2 Transcription Factor Family | AT1G74250 | 44.776 | 8.70e-11 | 62.0 |