Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g0728 ATGATTCTTTCCCGTACTTCTTTGATGTTACATCTCCAAATACCATCAATTCGATCCCATTTCTTCTCCCATTTTAAGCATGCTTACTCCTTCTTCTCCACTTCTTCGCCTTCTTTGGTTCATGTTCCCTACGTTTCGCTTCCTCGTCCTCGCCAACGGCTATTCCGGGCGTTCGGGAGTACCGTCGTGGCGGTAGCAGATGCAAATGGGAGAGACACATTCTTGGCGGAAGAAAATGTTTCGTGGAATTCACTTGGTCTGTCTGATGCCATTTCCCGAGCTCTCTCAAGTATTGGTCTCGATAGGCCATCTCTTGTCCAGGCTTCTTCTATACCATCTGTGCTTTCTGGAAAGGACGTGGTTATTGCTGCAGAGACTGGCAGTGGTAAAACACATAGTTACCTAGTTCCACTAATTGATAGGCTACGAGGGTCCAACAACAATTCTGAAAATACTGTTGATAATCAAAAAGAGTCTCTCTGTAAGATTCTGCTCGTTCTTTGTCCAAATGTACAACTCTGTGAACAAGTAGTTCAAATGGCGAACAGTATTTGTGGGGACAATGGTGCTCCGATTGTTAGTGTGGCAGCCATTTGTGGCAAACAGGGATGGCCAATTCGTGAACCAGATATCATTGTGACAACACCTGTTGCTCTCCTGAATTCTGTTGAGCAAAGCAGAAACCGTCGAATGGAATTCATGCGCAGTGTTAAATATGTGGTATTTGATGAAGCTGATATGCTTCTCTGTGGGAGTTTCCAAAATAAAGTGATTCGTCTGATAAACTTGCTTCGCTTTGATGAAAAACTATTATCTCAATCAAAAGAACCAGTATCAGAGTTACCGTTGGGGCTAGAATCCACCTTGTCATCACACAGTGCTGTAGATGGTGAACAGAAACAGCCCACTGAAGACACCATCTCTGAAGATGGGAATGATGATACCCATACGGTTGACACCAGTGATGAAGCTGGCTCAATCAAAAGAAGTGACTGGAGGAGAGTGAGGAAATATTATGAGCGTAGTAAGCAGTACATTTTTGTTGCAGCCACACTTCCTGTGAACGGGAAGAAAACAGCTGGTGCGATATTAAAACATATGTTTCCTGATGCCGAGTGGGTTAGTGGAAACTATCTTCATTGTCACAACCCAAGATTGGAGCAGAGGTGGGTTGAAGTTACTGTTGATACACAGGTGGATGAACTCATAAAAACTGTGAAACAAGGTTTCAGTCAAAATTTGGATAGTTTTGGGGCCATTTCTCGAACAATGGTGTTTGCCAACACTGTTGAGGCTGTTGAAGCTGTGGCAAAGATATTGGTCAGAGCTGGGATTGAATGTTTTCGCTATCATAAGGAATGCACCTTGGATGAGCGATCTAAGGCCTTAGTCGAATTCCGAGAGAAAGGTGGTGTTCTTGTATGTACTGATGCAGCTGCTCGTGGTGTTGATATTCCTAACGTCTCACATGTTATCCAGGTGGATTTTGCTAGTTCTGCTGTAGACTTCTTGCATAGGATTGGTAGAACTGGTCGAGCAGGTCAATTTGGACTTGTTACTAGCATGTACACTGAATCTAACAGGGAGCTTGTTGATGCGGTTCGCCGAGCAGGGGAACTTGGTCGACCTGTGGAGAGAGCGTTTAGCAGGAAAAGAAGTTTCCGTAACAAGATCAAGAAGAGGGCGTTGAACCAAGTCAGAGATTCAGATTCAGACATGGTTAAAGAGAGGGCTCTGGCTTGA 1743 0.4423 MILSRTSLMLHLQIPSIRSHFFSHFKHAYSFFSTSSPSLVHVPYVSLPRPRQRLFRAFGSTVVAVADANGRDTFLAEENVSWNSLGLSDAISRALSSIGLDRPSLVQASSIPSVLSGKDVVIAAETGSGKTHSYLVPLIDRLRGSNNNSENTVDNQKESLCKILLVLCPNVQLCEQVVQMANSICGDNGAPIVSVAAICGKQGWPIREPDIIVTTPVALLNSVEQSRNRRMEFMRSVKYVVFDEADMLLCGSFQNKVIRLINLLRFDEKLLSQSKEPVSELPLGLESTLSSHSAVDGEQKQPTEDTISEDGNDDTHTVDTSDEAGSIKRSDWRRVRKYYERSKQYIFVAATLPVNGKKTAGAILKHMFPDAEWVSGNYLHCHNPRLEQRWVEVTVDTQVDELIKTVKQGFSQNLDSFGAISRTMVFANTVEAVEAVAKILVRAGIECFRYHKECTLDERSKALVEFREKGGVLVCTDAAARGVDIPNVSHVIQVDFASSAVDFLHRIGRTGRAGQFGLVTSMYTESNRELVDAVRRAGELGRPVERAFSRKRSFRNKIKKRALNQVRDSDSDMVKERALA 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g0728 580 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 111 370 IPR014001 -
Acco12g0728 580 CDD DEADc 91 271 - -
Acco12g0728 580 MobiDBLite consensus disorder prediction 290 324 - -
Acco12g0728 580 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 111 526 IPR027417 -
Acco12g0728 580 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 80 108 IPR014014 GO:0003724
Acco12g0728 580 Pfam Helicase conserved C-terminal domain 421 514 IPR001650 -
Acco12g0728 580 Pfam DEAD/DEAH box helicase 106 271 IPR011545 GO:0003676|GO:0005524
Acco12g0728 580 Coils Coil 139 159 - -
Acco12g0728 580 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 90 548 - -
Acco12g0728 580 SMART helicmild6 434 514 IPR001650 -
Acco12g0728 580 SMART ultradead3 99 389 IPR014001 -
Acco12g0728 580 CDD SF2_C_DEAD 386 523 - -
Acco12g0728 580 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 398 574 IPR001650 -
Acco12g0728 580 Gene3D - 65 368 IPR027417 -
Acco12g0728 580 Gene3D - 387 579 IPR027417 -
Acco12g0728 580 MobiDBLite consensus disorder prediction 298 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g0728 Acco-ChrAcco12 6770416 6775093 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g0728 329 540 Eukaryotic Initiation Factors Gene Family AT5G11200 26.531 9.12e-12 65.5