Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g0689 ATGGTGCCGGCAGAGGCAGGGTTGATTGGCAACGGCAATATGACGCGGCAGCCAGACTGGGCCGGTGTAACTGGATCCAAGTTCGAGATCACCATGGCCCACAGGCTGCGGACAATGTCGCGGGTTTATGTTGGGAATTTGGACCCTCAGGTCACTGAGAGGGACCTTGAAGATGAATTTCGTATCTACGGCGTTCTGCGGAGCGTCTGGGTTGCTCGAAGGCCACCAGGTTACGCATTTCTTGAATTTGATGATAGGAGGGATGCCCTTGATGCTATTCATGCTCTGGATGGAAAAAATGGCTGGCGCGTAGAGCTTTCTCATAATTCCAAAGGTGGTGGAGGACGGGGCGGACGTGGACGTGGAGGTGAGGACTTAAAATGTTATGAGTGTGGCGAGCCTGGTCATTTTGCTAGGGAGTGCCGCATGCGTATTGGTTCACGAGGCTTTGGAAGTGGGCGTCGACGAAGCCCCAGTCCATATCGGCGCCGTAGAAGTCCAAGTTATGGTCGCAGGAGCTATAGCCCTATTGGAAGAAGATCTCCTTGGCGACGTAGCATTACACCTCGACGTGGACGCAGTTACAGCAGGTCCCCTCCCTATCGTCGCTCTCGCCGTGACTCTCCTTATGCCAATGGAGATTAA 645 0.5411 MVPAEAGLIGNGNMTRQPDWAGVTGSKFEITMAHRLRTMSRVYVGNLDPQVTERDLEDEFRIYGVLRSVWVARRPPGYAFLEFDDRRDALDAIHALDGKNGWRVELSHNSKGGGGRGGRGRGGEDLKCYECGEPGHFARECRMRIGSRGFGSGRRRSPSPYRRRRSPSYGRRSYSPIGRRSPWRRSITPRRGRSYSRSPPYRRSRRDSPYANGD 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g0689 214 ProSiteProfiles Zinc finger CCHC-type profile. 127 142 IPR001878 GO:0003676|GO:0008270
Acco12g0689 214 FunFam Serine/arginine-rich splicing factor RSZ21A isoform C 115 186 - -
Acco12g0689 214 SMART c2hcfinal6 127 143 IPR001878 GO:0003676|GO:0008270
Acco12g0689 214 FunFam Serine/arginine-rich splicing factor 7 40 107 - -
Acco12g0689 214 Pfam Zinc knuckle 127 142 IPR001878 GO:0003676|GO:0008270
Acco12g0689 214 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 111 IPR000504 GO:0003723
Acco12g0689 214 MobiDBLite consensus disorder prediction 105 124 - -
Acco12g0689 214 MobiDBLite consensus disorder prediction 184 199 - -
Acco12g0689 214 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 40 204 - -
Acco12g0689 214 SMART rrm1_1 41 107 IPR000504 GO:0003723
Acco12g0689 214 SUPERFAMILY RNA-binding domain, RBD 36 122 IPR035979 GO:0003676
Acco12g0689 214 CDD RRM_SRSF3_like 41 109 - -
Acco12g0689 214 MobiDBLite consensus disorder prediction 200 214 - -
Acco12g0689 214 Gene3D - 34 111 IPR012677 -
Acco12g0689 214 SUPERFAMILY Retrovirus zinc finger-like domains 117 145 IPR036875 GO:0003676|GO:0008270
Acco12g0689 214 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 99 IPR000504 GO:0003723
Acco12g0689 214 MobiDBLite consensus disorder prediction 148 214 - -
Acco12g0689 214 Gene3D - 123 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g0689 Acco-ChrAcco12 6388203 6391655 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g0689 30 97 Eukaryotic Initiation Factors Gene Family AT1G22760 37.500 9.91e-07 47.0