Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g0643 ATGGAAGAAATCTACGGTGCGCCTTTGTCGGCGGACTACTCTGACAAGGCCTTGATGACGCCGGAGAACCTCTTATTCGACGCTGATTACCAGAGCTTCCTCCCCTCCTCCTCCTCCTCCGGCGGCTTCCACTATCGGAATCCGATGTTCGGTTCCGACGACCTGCTTTCTGCCATTACTGAAACTGAGCCGCCGTATGTTGCCCCTGGAATTCAACCTGACGACGATGCCTCGACTTCCTCTCTCATCAAAGCTAAAATCGCTTCTCATCCACACTATCCTCGTCTCCTCCAAGCTTTCCTCGATTGTCAGAAGGTGGGGGCGACTGCAGAAATAGCGTGTCTGTTAGATGAAATCAAGCGAGAAAATGATGTTCGTAAGCGAGAGGTTGTTTCCACGTGCTTCGGTGACGATCCCGATCTCGACGAGTTCATGGAAACGTATTGCGATCTTCTGATAAAGTATAAATCTGACCTTTCGCGGCCTTTTGACGAAGCCACTACTTTCCTCAACGACATCGAAATCCAGCTCAGCCATCTGTGCTCTGGTGCCTCCGTTCCTACCCTCTCCGATGATGGAGGCATGTCTTCTGAAGATGTTGATGCAGAAGATGCAAGCGGATCGCGCGGGGAAGATCGGGAGCTAAAGGACAGGCTTTTAAATAAGTTTGGGCGTCGGATTAGTAGTTTGAAATTGGAGTTCTCCAAGAAGAAGAAGAAAGGCAAACTTCCCAAGGAAGCTAGGCAAATGCTTCTAGAATGGTGGAATGTTCACTACAAATGGCCTTACCCCACGGAAGGGGATAAGATAGAACTGGCAAAGTCGACGGGGCTGGATCAAAAGCAAATCAACAATTGGTTTATTAATCAGAGGAAGCGTCACTGGAAACCCTCCGAGAACCTTCACTTCTCTGTTACGGATACTCTCACTGGAGGCTTCTACTCCGATCCTCGTGTATGA 960 0.4948 MEEIYGAPLSADYSDKALMTPENLLFDADYQSFLPSSSSSGGFHYRNPMFGSDDLLSAITETEPPYVAPGIQPDDDASTSSLIKAKIASHPHYPRLLQAFLDCQKVGATAEIACLLDEIKRENDVRKREVVSTCFGDDPDLDEFMETYCDLLIKYKSDLSRPFDEATTFLNDIEIQLSHLCSGASVPTLSDDGGMSSEDVDAEDASGSRGEDRELKDRLLNKFGRRISSLKLEFSKKKKKGKLPKEARQMLLEWWNVHYKWPYPTEGDKIELAKSTGLDQKQINNWFINQRKRHWKPSENLHFSVTDTLTGGFYSDPRV 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g0643 319 SMART HOX_1 236 301 IPR001356 GO:0003677
Acco12g0643 319 Pfam Homeobox KN domain 254 293 IPR008422 GO:0003677|GO:0006355
Acco12g0643 319 SMART KNOX2_2 131 182 IPR005541 GO:0003677|GO:0005634
Acco12g0643 319 Pfam KNOX1 domain 83 124 IPR005540 GO:0003677|GO:0005634
Acco12g0643 319 SUPERFAMILY Homeodomain-like 235 307 IPR009057 -
Acco12g0643 319 Pfam ELK domain 214 235 IPR005539 GO:0003677
Acco12g0643 319 ProSitePatterns 'Homeobox' domain signature. 272 295 IPR017970 GO:0000981|GO:0006355
Acco12g0643 319 SMART KNOX1_2 81 125 IPR005540 GO:0003677|GO:0005634
Acco12g0643 319 Gene3D - 232 303 - -
Acco12g0643 319 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 64 303 - -
Acco12g0643 319 ProSiteProfiles 'Homeobox' domain profile. 234 297 IPR001356 GO:0003677
Acco12g0643 319 SMART ELK_2 214 235 IPR005539 GO:0003677
Acco12g0643 319 Pfam KNOX2 domain 135 181 IPR005541 GO:0003677|GO:0005634
Acco12g0643 319 MobiDBLite consensus disorder prediction 188 212 - -
Acco12g0643 319 CDD homeodomain 246 298 IPR001356 GO:0003677
Acco12g0643 319 ProSiteProfiles ELK domain profile. 214 234 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g0643 Acco-ChrAcco12 5876181 5882527 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g0643 1 316 Homeobox Transcription Factor Family AT1G23380 60.725 3.06e-133 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Acco12g0643 KNOX2 5e-23 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco11g1072 11 23263151 23272318 Acco12g0643 12 5876181 5882527 CCT