Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g0620 ATGGCTCTGCTTCTAGGCGGTATTCAGCCTCATATACTAGCTTCCTTTCCTCATGATCATAGAAAACCTTGTATAAGAGTTTGTCGCACACGCTTCCATTTCGCCGTTAATACTATAAATCATACTGTTCCTTCCAGTCCTTCTTTTAATCGGAGACGCATACTTGCGAGCCCTCCAAAATCAGCGTCCATAGATGGGTTTTCTGTCCAGGAGAATCCCGAAGCTTTAAATGAAGTCAAAGAAGAAGAAAAAGAGTTTCTGAAGAGGCTTAGGAGATGGTTCAGTTTTCTTCCTTCGATTTTGCCTGGAGGAAGCTGGTGGAACTTCTCCGAAAACGTCGAAATTCAAGATTCAGCTAAACCCGTTACTGTGTGGCGCGCGCTTGCCAAAATGTGGCAACTTGTTGCTCAAGACCGATGGATTATTTTAGCTGCATTCTGTGCTCTGATTCTTGCGGCGATTTCGGAGATTTCCATACCGCATTTCTTAACAGCATCTATCTTCTCCGCACAGGGTGCGGATGTTCAGGTTTTCCGTCGGAATGTGCTCCTCTTGGTTCTGTTCTGTATAAATTCGGGAATTTTCAGTGGCATACGAGGCTGCTGTTTCGGAATTGCAAATATGATACTGGTAAAGAGAATGAGAGAAACATTATACTCCTCCCTTCTTCTTCAGGATATATCATTTTTTGACAATGCAACAGTTGGTGATCTGACAAGTAGGCTTGGTGCTGATTGCCAACAAGTTTCACGTGTTATTGGAAATGATCTTAACTTGATATTGCGCAATGTTCTTCAGGGAACAGGTGCATTGACCTACTTGTTATTTTTGTCTTGGCCTCTTGGTTTATTTACATTGATGATATGCTCTATATTATCAGCAGTTTTGCTACTTTATGGAAGGTACCAGAAAAAGGCTGCAAAGTTGATTCAAGATGTCACTGCTTCTGCCAATGAAGTTGCACAAGAGACATTTTCTCTGATTAGAACTGTCCGTGTTTATGGAACAGAAGAAGAAGAATTTGGAAGGTACAAATGGTGGTTGGAAAAGTTAGCTGATATAAGCTTGAGACAAAGTGCTGCTTATGGATTTTGGAATTTCAGCTTCAATAATCTTTATCATTCAACTCAGGTTATTGCCGTGCTGTTTGGAGGAATGTCTATTCTAGCTGGTCATATTACAGCAGAGAAACTTACTAGGTTTATACTATACAGTGAATGGCTTATTTATTCAACCTGGTGGGTGGGAGATAGTATATCATCTTTGATGCAATCTGTTGGGGCTAGTGAAAAAGTATTCCAATTGATGGATCTCTTACCAAGCAGCCAGTTCCATACAAAAGGAATGAAGCTGCAGAGGTTAACTGGGAATATTGAATTTATAAATGTATCTTTTCACTATCCTTCAAGACCAACGGTATCTGTAGTGCAGCATGTAAATTTTGCTGTCCGACCTGGTGAGGTGGTTGCAATAGCTGGTCTTAGTGGCAGTGGAAAAAGTACACTGGTGAACCTTCTGCTCCACCTATATGAGCCAACCAATGGTCAGATTTTGATTGATGGCGTCCCTCTTAATGAGTTGGACATCATGTGGTGGAGGGAAAGAATTGGATTTGTTGGACAGGAACCTAAGCTCTTCAGAGTGGATATTAATTCAAACATAAGATATGGATGCACTAGAGAGATTACGCAAAAGGATGTTGAATGGGCTGCAAAACAAGCTTATGCTCATGACTTCATCTCAGCTCTACCAAATGGCTATGAAACACTTGTTGATGATGATTTGTTAAGTGGGGGACAAAAGCAGCGAATTGCTATTGCTAGAGCTATTGTTAGGGATCCAAAAGTATTGATCCTTGATGAAGCCACCAGTGCTCTGGATGCTGAGAGTGAATATAATGTCAAGGGTGTGCTTCGTTCTGTTAAAAATGACTCCCTGAGTAAGAGATGTGTTATTGTAATTGCACACAGGCTTTCTACCATACAAGCAGCAGACAGGATTGTGGTAATGGATAGTGGTAGAATTGTTGAGATTGGAAGTCACAGAGAACTTCTCTTAAGAGATGGTTTGTATGCACGGTTGACCAGTAAACAAGCTGACATAGTGGAATGA 2112 0.411 MALLLGGIQPHILASFPHDHRKPCIRVCRTRFHFAVNTINHTVPSSPSFNRRRILASPPKSASIDGFSVQENPEALNEVKEEEKEFLKRLRRWFSFLPSILPGGSWWNFSENVEIQDSAKPVTVWRALAKMWQLVAQDRWIILAAFCALILAAISEISIPHFLTASIFSAQGADVQVFRRNVLLLVLFCINSGIFSGIRGCCFGIANMILVKRMRETLYSSLLLQDISFFDNATVGDLTSRLGADCQQVSRVIGNDLNLILRNVLQGTGALTYLLFLSWPLGLFTLMICSILSAVLLLYGRYQKKAAKLIQDVTASANEVAQETFSLIRTVRVYGTEEEEFGRYKWWLEKLADISLRQSAAYGFWNFSFNNLYHSTQVIAVLFGGMSILAGHITAEKLTRFILYSEWLIYSTWWVGDSISSLMQSVGASEKVFQLMDLLPSSQFHTKGMKLQRLTGNIEFINVSFHYPSRPTVSVVQHVNFAVRPGEVVAIAGLSGSGKSTLVNLLLHLYEPTNGQILIDGVPLNELDIMWWRERIGFVGQEPKLFRVDINSNIRYGCTREITQKDVEWAAKQAYAHDFISALPNGYETLVDDDLLSGGQKQRIAIARAIVRDPKVLILDEATSALDAESEYNVKGVLRSVKNDSLSKRCVIVIAHRLSTIQAADRIVVMDSGRIVEIGSHRELLLRDGLYARLTSKQADIVE 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g0620 703 PANTHER ABC TRANSPORTER B FAMILY 124 694 IPR039421 -
Acco12g0620 703 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 448 698 IPR027417 -
Acco12g0620 703 SUPERFAMILY ABC transporter transmembrane region 130 440 IPR036640 GO:0005524|GO:0016020
Acco12g0620 703 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 143 424 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Acco12g0620 703 Gene3D ABC transporter type 1, transmembrane domain 109 295 IPR036640 GO:0005524|GO:0016020
Acco12g0620 703 ProSitePatterns ABC transporters family signature. 596 610 IPR017871 GO:0005524|GO:0016887
Acco12g0620 703 FunFam Multidrug ABC transporter ATP-binding protein 450 702 - -
Acco12g0620 703 Pfam ABC transporter transmembrane region 143 409 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Acco12g0620 703 Pfam ABC transporter 477 624 IPR003439 GO:0005524
Acco12g0620 703 Gene3D ABC transporter type 1, transmembrane domain 299 700 IPR036640 GO:0005524|GO:0016020
Acco12g0620 703 FunFam ABC transporter B family member 26, chloroplastic 124 443 - -
Acco12g0620 703 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 458 697 IPR003439 GO:0005524
Acco12g0620 703 SMART AAA_5 485 674 IPR003593 GO:0016887
Acco12g0620 703 Gene3D - 448 699 IPR027417 -
Acco12g0620 703 CDD ABC_6TM_TAP 145 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g0620 Acco-ChrAcco12 5657269 5663423 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g0620 105 698 Calmodulin-binding Proteins AT2G36910 29.549 4.31e-68 241