LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco12g0612	ATGGAAGAAGCACTCAGGAGGCTTAACGGGTTGGCCCCGATTCCAGAACCCGACCCACAACAGGACTCCATCTCCGACCACCCAAAGAAGTGCCCAACCACTACCACTAAGAGGACAGCCAGAGAAAACGGCGGTACAATGAGGTACCGCGGCGTTCGGCGCAGGCCCTGGGGCCGTTACGCGGCAGAGATAAGAGACCCTCAGTCCAAAGAGCGACGGTGGCTCGGCACTTTCGACACGGCGGAGGAAGCCGCATGTGCCTACGATTGCGCCGCCCGTGCCATGCGCGGTCCCAAAGCTCGCACCAATTTCGTTTACCCCACTTCACCCCCCTCTGCCACCACCGAACATCATCTCTTCCCTCATTTCGCCTTCACCAAACAATCCCACAATCAAACGAACAATAACAACCTTAACCGTCATAACCGCCCTTTAGGGTGGCCTTCTTCTTCTAGCTCTAACTCTCACGTTTCTGATTTTTCTTCAACATCTAATTCTTCTCTGAACATGTTTCTGTTTCGTGACTACCTGAACTCTGCTTCTAATAACCCATCTTTGGTTGCTTCTGCTCAGCAACTTTACATCCCTGGGAACAACAATATCACTTGTTCATGTTCTGGTTCCTCGTCCTCCGCTGTCCCAGGTTGCTGTGTCGTGAATTCTGCTAGTGGTGATATGGAGAATTCCAGAATTACCACTGAAGCTGATAATGAAGACTCTGAATTCTTCCCCAGAGACCACTCGGGCTCTGGATTGCTGGAAGAGATAGTCCATAAGTTCTTACCAAAATCAAAGCCAGCGGAGGTTCGCGTGAAAGAGGAGACTCTGTCTCTGTCGACACCACAGTTGCTTCCTCCTCCTCAGCCAGTGTATGGTCATGGCATGTTCACTTCTACCTCTTCTTTGTCCTATGGAAGTCTTGGGAATAAGGAGGTCACCAAAGCTGAGGATTATTATAATAATGGGTCTAATTATGATCACCAAGGTTTCTCCATGCAGCAATTTGAGAACTTTCAGAATGGGTATAGTTACAGCACTGGACAAGGCTTACCTCTTAGAAGCGACCTTCACTTGATGATGAACGAAGCTGCTGGCTACTCCATCATGGAAGATATTTTCGAGCACCCAGAGCTTCTTAATGAATTTGTAGCTAGAATACAAAATGCTTAA	1170	0.488	MEEALRRLNGLAPIPEPDPQQDSISDHPKKCPTTTTKRTARENGGTMRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDCAARAMRGPKARTNFVYPTSPPSATTEHHLFPHFAFTKQSHNQTNNNNLNRHNRPLGWPSSSSSNSHVSDFSSTSNSSLNMFLFRDYLNSASNNPSLVASAQQLYIPGNNNITCSCSGSSSSAVPGCCVVNSASGDMENSRITTEADNEDSEFFPRDHSGSGLLEEIVHKFLPKSKPAEVRVKEETLSLSTPQLLPPPQPVYGHGMFTSTSSLSYGSLGNKEVTKAEDYYNNGSNYDHQGFSMQQFENFQNGYSYSTGQGLPLRSDLHLMMNEAAGYSIMEDIFEHPELLNEFVARIQNA	389

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco12g0612	389	PANTHER	AP2 DOMAIN CLASS TRANSCRIPTION FACTOR	35	210	-	-
	Acco12g0612	389	FunFam	Ethylene-responsive transcription factor 2	47	106	-	-
	Acco12g0612	389	Gene3D	AP2/ERF domain	47	106	IPR036955	GO:0003700\|GO:0006355
	Acco12g0612	389	PRINTS	Ethylene responsive element binding protein signature	49	60	IPR001471	GO:0003700\|GO:0006355
	Acco12g0612	389	PRINTS	Ethylene responsive element binding protein signature	71	87	IPR001471	GO:0003700\|GO:0006355
	Acco12g0612	389	MobiDBLite	consensus disorder prediction	129	159	-	-
	Acco12g0612	389	ProSiteProfiles	AP2/ERF domain profile.	48	105	IPR001471	GO:0003700\|GO:0006355
	Acco12g0612	389	SMART	rav1_2	48	111	IPR001471	GO:0003700\|GO:0006355
	Acco12g0612	389	MobiDBLite	consensus disorder prediction	1	44	-	-
	Acco12g0612	389	SUPERFAMILY	DNA-binding domain	48	105	IPR016177	GO:0003677
	Acco12g0612	389	CDD	AP2	48	104	IPR001471	GO:0003700\|GO:0006355
	Acco12g0612	389	Pfam	AP2 domain	48	97	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco12g0612	Acco-ChrAcco12	5595930	5597099	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco12g0612	1	263	AP2-EREBP Transcription Factor Family	AT1G24590	39.362	7.09e-43	150

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Acco12g0612		AP2	2.2e-12	CL0081