Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g0587 ATGGCGAGGGAGAAAATTCAGATTAAGAAGATCGACAACGCCACGGCGAGGCAGGTGACGTTCTCGAAGCGACGGAGAGGACTGTTCAAGAAAGCTGAGGAGCTCGCAGTTCTCTGCGATGCAGATGTTGCTCTAGTGATCTTCTCCTCTACCGGCAAGCTCTTTCACTACTCTAGCTCAAGTTTGAAGGAATTAGTTGAAAGGCGTCATTTGCACTCAAAAAACCTCTCGAAGCTGGACCAGCCGTCTCTTGAGCTGCAGCTAGTTGAGGACAGCAACTGCTCGAATTTGAGCAAGGAGATTAGCGAGAAGAGCCGTCAACTGAGGCGGTTGAGAGGAGAGGATCTTCAAGGTTTGAATATTGAAGAATTACAAGAACTTGAGACGTCACTCGAAGCTGGGTTGAGCCGTGTGGTTCAAACGAGGTCACAGATGATGATGGATGAGATCAGTGATCTCGAAAGAAAGGGAATGCAATTAATGGAAGAGAACAGGCGTTTAAGACGTCAAGTGGCAGAAATGCCAAGTGAAATATGCGGTGCCGAGGAAGGTCAATCATCAGAGTCCGTCGGTAACATTTGCAGCTACGATGGGCATCCTCTAGACTATGTTGTCAACTCAGACACTTCCCTTAGACTGGGGGCTGGAAGGCGTAGAGAAACGAAAGCTGTGCTAAATGTAATGGGCCCATAG 693 0.4834 MAREKIQIKKIDNATARQVTFSKRRRGLFKKAEELAVLCDADVALVIFSSTGKLFHYSSSSLKELVERRHLHSKNLSKLDQPSLELQLVEDSNCSNLSKEISEKSRQLRRLRGEDLQGLNIEELQELETSLEAGLSRVVQTRSQMMMDEISDLERKGMQLMEENRRLRRQVAEMPSEICGAEEGQSSESVGNICSYDGHPLDYVVNSDTSLRLGAGRRRETKAVLNVMGP 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g0587 230 Pfam K-box region 93 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Acco12g0587 230 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Acco12g0587 230 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Acco12g0587 230 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Acco12g0587 230 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Acco12g0587 230 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Acco12g0587 230 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Acco12g0587 230 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Acco12g0587 230 SUPERFAMILY SRF-like 3 78 IPR036879 GO:0003677|GO:0046983
Acco12g0587 230 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 165 - -
Acco12g0587 230 FunFam Transcription factor, MADS-box 13 83 - -
Acco12g0587 230 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Acco12g0587 230 Coils Coil 94 114 - -
Acco12g0587 230 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Acco12g0587 230 Coils Coil 150 170 - -
Acco12g0587 230 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g0587 Acco-ChrAcco12 5283576 5286389 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g0587 1 214 MADS-box Gene Family AT2G22540 63.559 1.39e-96 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Acco12g0587 K-box 3.5e-18 No_clan