Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g0570 ATGGCTCGGTCTACCAACTGGTTATCGTTTTCTTTGTCGCCGATGGAAATGCTGAGGTCTGCGAACTCGCAGTACCTTCAATACGACGCTGTTTCTGATGCTGCTCCTCCTCCTCACTACTTCGTCGATAACTTCTATGCCAATGGTAAACGACTCTATGATTATATTGGTTTTTGTGGATACGACAAAGAAGACAAGGCCGCAAGAGCTTATGATTTGGCAGCTCTAAAGTACTGGGGCCCCACTGCCACCACTAACTTCCCTGTTGCCAGTTATGCAAAGGAAATGGAGGAGATGAAGCATGTTACAAAGCAAGAATTTATCGCCTCACTGCGAAGGAAAAGTAGCGGATTTTCCAGGGGAGCTTCTATTTACAGGGGCGTCACAAGGCATCACCAACAGGGTAGATGGCAAGCTAGAATTGGGCGTGTTGCGGGGAACAAGGATCTGTATCTTGGAACATTTGCCACTGAAGAGGAAGCAGCTGAGGCATACGATATTGCAGCCATTAAGTTCAGGGGTGCAAATGCTGTGACCAACTTTGAGATGAGTAGATATGATGTTGAAGCTATCATGAAGAGTTCTCTTCCCATCGGTGGGGTGGCGAAACGCCTGAAGCTTTCGCTCGAATCCGAGCAGAAAGCGGTACTGAGCAATAATAGCCAACAAATCCAATGCACCAACATGAGTAACAACATCAACTTCTCACCAATTCAGGCGGTTTCCTCTGTCCCTTGTGCAATTCCATTTTATCCTGCTGCTGCTTACCATCACCACAATCTCTTGAACCATTTTTGTTCTTCCGATGCCGGCGCTACTGCAGAATCAGTTGTAACTAACCCTTCAACGACTCCGTATCCTACCCTGGCTGCGCCATCTGAGTTCTTTATATGGTCTCCACATCAGTCATATTGA 915 0.4689 MARSTNWLSFSLSPMEMLRSANSQYLQYDAVSDAAPPPHYFVDNFYANGKRLYDYIGFCGYDKEDKAARAYDLAALKYWGPTATTNFPVASYAKEMEEMKHVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGANAVTNFEMSRYDVEAIMKSSLPIGGVAKRLKLSLESEQKAVLSNNSQQIQCTNMSNNINFSPIQAVSSVPCAIPFYPAAAYHHHNLLNHFCSSDAGATAESVVTNPSTTPYPTLAAPSEFFIWSPHQSY 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g0570 304 SUPERFAMILY DNA-binding domain 60 89 IPR016177 GO:0003677
Acco12g0570 304 CDD AP2 123 184 IPR001471 GO:0003700|GO:0006355
Acco12g0570 304 Gene3D AP2/ERF domain 38 90 IPR036955 GO:0003700|GO:0006355
Acco12g0570 304 Gene3D AP2/ERF domain 124 184 IPR036955 GO:0003700|GO:0006355
Acco12g0570 304 Pfam AP2 domain 124 174 IPR001471 GO:0003700|GO:0006355
Acco12g0570 304 FunFam AP2-like ethylene-responsive transcription factor 123 184 - -
Acco12g0570 304 ProSiteProfiles AP2/ERF domain profile. 27 88 IPR001471 GO:0003700|GO:0006355
Acco12g0570 304 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 48 222 - -
Acco12g0570 304 SUPERFAMILY DNA-binding domain 123 184 IPR016177 GO:0003677
Acco12g0570 304 PRINTS Ethylene responsive element binding protein signature 164 184 IPR001471 GO:0003700|GO:0006355
Acco12g0570 304 PRINTS Ethylene responsive element binding protein signature 125 136 IPR001471 GO:0003700|GO:0006355
Acco12g0570 304 ProSiteProfiles AP2/ERF domain profile. 124 182 IPR001471 GO:0003700|GO:0006355
Acco12g0570 304 SMART rav1_2 124 188 IPR001471 GO:0003700|GO:0006355
Acco12g0570 304 SMART rav1_2 37 94 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g0570 Acco-ChrAcco12 5138502 5142596 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g0570 55 304 AP2-EREBP Transcription Factor Family AT5G65510 65.613 1.99e-96 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Acco12g0570 AP2 1.1e-10 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco11g1169 11 24913051 24917673 Acco12g0570 12 5138502 5142596 CCT