Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g0550 ATGATTTTACAGGTGGTGATGTATAATGGGATCGTTAGCATTACATTGTCAAGGCCAGACGGCAATTTGATAGGATTATCCTATAATGGGATTGATAACCTTCTTGAACCTCGTACTCGTCCTGATAATAGAGGGTATTGGGACTTTTCTTGGAACGCACCAGGTTACCGCAGTAACTATGACAGATTCAGAGGGACAACGTTTTCTGTTATAGTGGAGAACGAAGACCAAGCCGAAGTTTCTTTCTTATACACATGGAATCCTACCTTGCCTGCAAGAAGCATGCCAATGAATATAGATATAAGGTATATTTTACGTAGGGGCAGCTCAGGATTATATTCATATGCCATATTGGAGCGTCTAGAAGGTTTTCCTTCCATTCGGGTGGATGTCTTTAGGCTCACTTATAAGCTCAGCCAATACCTGTTCCATTACATGGCTATAACAGACGAAAGGCAGAGAGAAATGCCCAGTGCTGGAGATAGATCCAAAGGCCAAACCCTTGATTATCCTGAAGCTGTCCTATTAACCAATCCTAGTAACCCTGAATTCTTTGGGGAGGTGGATGATAAATACATGTACTCGGTGGAGAACAAAGACAACAAAGTTAACGGATGGGTCTCTTTTAACACTCCCAATTCTTCATCAGTTGGGTTCTGGATGATTACACCCAGCAACGAATTCCGTAATGGTGGACCTACCAAGCAAAGTCTCACCTCTCATGTTGGCCCTGTCACCCTCAACTCTTTTCTGAGCCCACACTATGCTGGGAAGGACATATCCATGTTCTTCAGAGAGGGAGAGACCTATAAGAAGGTATTTGGCCCCACCTTTTTGTACCTCAACACTGTTCTAAATCCCCATGATTCTCAGACTCTCTGGGAGGATGCTAAAAACCAGATGCAAAAGGAAGTTGAAAGCTGGCCCTATGATTTCCCAAGATCAAAAGACTTCATTCCATCCAATCAACGGGGAAAAGTGTCTGGACAATTACTAATCACAGGGTATAAATATTATATTTGTATTCCATCTGGTAATGCTTACGTTGGTCTGGCCCTCCCAGGATATGAAGGATCATGGCAAACAGAAAGCAAGGGTTATCAATTTTGGATCCAAGCTGATAGCAGCGGCTTGTTCACTATACAAAATGTTGTGCCTGGGGTCTACGACTTGTATGCTTGGGTGCCTGGCATTCTTGGTGATTACAAATATGAGTTTGACATTACCATCAAACCAGGAGATGCCATAGAATTAGGTCAGTTAAATTATAGGCCTCCAAGAAATGGTCCGACGGTTTGGGAAATTGGGATTCCTGATCGATCAGCCCAAGAGTTTTATGTGCCAGACCCATATCCTAACCTCATTAACAAGTTATTTTTAGGAAAGCCCAATCACAGGTTTAGACAATACGGTTTGTGGAAACGCTACTCTGAATTATATCCAACTAATGACCTCGTTTACCATGTTGGTGTCAGTGATTATTCCAAACATTGGTTCTATGCTCAAGTCCCCAGGGACCTGGGAAATGGCACATACACTTCAACGGTATGGGAGATAAGATTTGAATTGCCATTTGTTATTCCAGGAAGTTACACACTACATGTTGCTTTAGCATCATCCAGCAGTTATCACTTGCATGTTTGGTTCAATAATGGCGCTGATCGTCGCATGCGGTTCGATACAAGATTAAGAGGAGGAGATCAAGACAATGCAATAGCAAGGCATGGGATACATGGATTGTGTTGGAGGTACAGTTACCAAGTGCCAAGCTATCTACTTGTGAATGGAACCAACTCCATTTACCTCTCCCCATTCAGAGTCTTTTCTCCTCTTCAAGGCATTATGTATGATTATATCCGTCTTGAAAGCCCCTAG 1875 0.4267 MILQVVMYNGIVSITLSRPDGNLIGLSYNGIDNLLEPRTRPDNRGYWDFSWNAPGYRSNYDRFRGTTFSVIVENEDQAEVSFLYTWNPTLPARSMPMNIDIRYILRRGSSGLYSYAILERLEGFPSIRVDVFRLTYKLSQYLFHYMAITDERQREMPSAGDRSKGQTLDYPEAVLLTNPSNPEFFGEVDDKYMYSVENKDNKVNGWVSFNTPNSSSVGFWMITPSNEFRNGGPTKQSLTSHVGPVTLNSFLSPHYAGKDISMFFREGETYKKVFGPTFLYLNTVLNPHDSQTLWEDAKNQMQKEVESWPYDFPRSKDFIPSNQRGKVSGQLLITGYKYYICIPSGNAYVGLALPGYEGSWQTESKGYQFWIQADSSGLFTIQNVVPGVYDLYAWVPGILGDYKYEFDITIKPGDAIELGQLNYRPPRNGPTVWEIGIPDRSAQEFYVPDPYPNLINKLFLGKPNHRFRQYGLWKRYSELYPTNDLVYHVGVSDYSKHWFYAQVPRDLGNGTYTSTVWEIRFELPFVIPGSYTLHVALASSSSYHLHVWFNNGADRRMRFDTRLRGGDQDNAIARHGIHGLCWRYSYQVPSYLLVNGTNSIYLSPFRVFSPLQGIMYDYIRLESP 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g0550 624 Pfam Polysaccharide lyase family 4, domain II 346 417 IPR029413 -
Acco12g0550 624 SUPERFAMILY Starch-binding domain-like 322 418 IPR013784 GO:0030246
Acco12g0550 624 CDD RGL4_M 323 421 IPR029413 -
Acco12g0550 624 Gene3D - 319 418 - -
Acco12g0550 624 Gene3D - 429 622 - -
Acco12g0550 624 CDD RGL4_N 3 290 - -
Acco12g0550 624 Gene3D - 62 297 IPR014718 GO:0030246
Acco12g0550 624 SUPERFAMILY Galactose-binding domain-like 428 622 IPR008979 -
Acco12g0550 624 Pfam Polysaccharide lyase family 4, domain III 431 621 IPR029411 -
Acco12g0550 624 CDD RGL4_C 433 622 - -
Acco12g0550 624 SUPERFAMILY Galactose mutarotase-like 12 283 IPR011013 GO:0003824|GO:0005975|GO:0030246
Acco12g0550 624 Pfam Rhamnogalacturonate lyase family 4 188 IPR010325 -
Acco12g0550 624 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 4 624 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g0550 Acco-ChrAcco12 4973062 4977629 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g0550 5 624 Polysaccharide Lyase AT1G09910 52.724 0.0 646