Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g0549 ATGGAGGGTCGTGATATAAGGAAAAGAGTTTTCTTGTTGTGGTGGTTTGGAGTGAACCTGAAGCTTTTCTTTTTGCAATGTGGTTGTTCTGACAACAAAGTCTCAGAAAGCAGCAGAAAAATGTTGAGAAATATAAACAGTAGTTCGAAACCCAGTTCTGAAGTTAGGGTGAATACAGAACATGGTGAGAGAGTGGTGATGAACAATGGCATAGTCCAAGTCACTCTATCAAATCCCCAGGGGCATGTTGTGGGAATATCATATAAGGGAATCGACAATGTACTAGAATCTAGCAACGATGATCGAGACAGAGGGTATTCTGATGTAGTTTGGAATAAACCAGGAAAAACTAAACATCATCATCAGAGAATCGACGGGACAAAGTTTACAGTTGTAGAAGATAACAAAAATCAAGTGGAGATTTCGTTTGTAACAACATGGACATCTTCCATGGAAGGCAAAAGTGTCCCCATTAACATAGACCAAAGGTATATATTGCTACGAGGAAGTTCTGGATTTTACTCTTATATTATATTCGAGCGTCCAGAAGGATTTCCAGCAGTGAAGGTTGAGCAAATCAGAACTGTTTACAAGCTTCAGGAAGAAATGTTCCACTATATGGCTATATCAGACACTAGGCAAAGATACATGCCAACAATGAGAGATAGAAAAAGAGGGAAAACCTTAGATTATCCTGAAGCTGTTCTCTTAACCAACCCATCCAACGAAACCTTTAAAGGAGAGGTGGACGACAAATATCAGTATATTCTTCAGAATAAAGACAACAGAGTACATGGTTGGGTTAGCATTAATTATGATGCAGCCATGGGGTTCTGGATAATAACACCTAGCAACGAGTTTCGCAATGGTGGGCCCTTTAAGCAAGATCTTACCTCCCATGTTGGTCCCTTTGCCCTATCTATGTTTATGAGCATTCACTTGGCTGGGAAGGATTTAGTCATGGAATTTCAAGAAGGGGAAACCTACAAAAAAGTTTTTGGCCCTGTTTTTGTGTATCTTAACTCCATTTCAAGCAATGTCAATACACAAACTCTCTGGCAAGATGCTGTACAGCAGATGTTCAAGGAAGTCCAAAGCTGGCCTTATGATTTCCCAAAATCACAAGACTACATTCCACCACCCAAACGAGGAACTGTGGTTGGAAGATTACTAGTTCAAGATATGTACATCCAAGGAGGCAGGTTTCAAAATGGTGACTCTGCTTATGTTGGTTTAGCTTTGCCTGGTGAAGCAGGATCATGGCAAAGAGAAAGCAAGGGTTATCAGTTCTGGACTAAAGCTAGCAAGGAAGGCTATTTCGCAATACAGAATGTTATACCAGGAGAGTATGATTTGTTTGCATGTGTTCCAGGCTTTATTGGCGATTATAAATATGATACAACAATCACCATCGAACCAGGGTGTTGGATCGAATTGGGTTATATTGTATATAGTCCTCCAAGAAATGGTCGTACCGTTTGGGAAATTGGAATTCCAGATCGCTCAGCAGCAGAATTCTATATCCCCAACGCAAATAAAGAACTCATGAACAAATTATACAACAATTATCCCAAAGAAAAGTTTAGACAATATGGATTGTGGTCACGTTATGCTGAATTGTATCCAAAAAATGATCTGGTTTACACTGCTGGTGTTGATTCTCATGAAAAGGATTGGTTCTTTGCTCATGTTACAAGGAACGTAGGAGATAACAAGTATCAAGCGACTATATGGCAGATTAAATTTGAACTCAAACATCGCGATCAATTAGAAGGAAATTACACCCTACGGCTGGCTTTAGCATCAGCCACTAATTCTAAATTGCAGGTTTGGTTCAACGAGCAAGTTGAGAAGAGTCACTTATTTAAAACAGGACTGTTAAGAGGAGACAATGCCATAGCAAGACACGGAATCCATGGATTGTATTGGTTATTCAGCGTTGATGTTCCAAGAGATCATCTGGTGGAAGGCACCAATACTATGTATTTGAAACAGCCACTTGCTCTTACTCCCTTCCAAGGACTTATGTATGACTATATACGTCTAGAGAGACCTCCCTCCCCAAGAATTTGA 2073 0.3994 MEGRDIRKRVFLLWWFGVNLKLFFLQCGCSDNKVSESSRKMLRNINSSSKPSSEVRVNTEHGERVVMNNGIVQVTLSNPQGHVVGISYKGIDNVLESSNDDRDRGYSDVVWNKPGKTKHHHQRIDGTKFTVVEDNKNQVEISFVTTWTSSMEGKSVPINIDQRYILLRGSSGFYSYIIFERPEGFPAVKVEQIRTVYKLQEEMFHYMAISDTRQRYMPTMRDRKRGKTLDYPEAVLLTNPSNETFKGEVDDKYQYILQNKDNRVHGWVSINYDAAMGFWIITPSNEFRNGGPFKQDLTSHVGPFALSMFMSIHLAGKDLVMEFQEGETYKKVFGPVFVYLNSISSNVNTQTLWQDAVQQMFKEVQSWPYDFPKSQDYIPPPKRGTVVGRLLVQDMYIQGGRFQNGDSAYVGLALPGEAGSWQRESKGYQFWTKASKEGYFAIQNVIPGEYDLFACVPGFIGDYKYDTTITIEPGCWIELGYIVYSPPRNGRTVWEIGIPDRSAAEFYIPNANKELMNKLYNNYPKEKFRQYGLWSRYAELYPKNDLVYTAGVDSHEKDWFFAHVTRNVGDNKYQATIWQIKFELKHRDQLEGNYTLRLALASATNSKLQVWFNEQVEKSHLFKTGLLRGDNAIARHGIHGLYWLFSVDVPRDHLVEGTNTMYLKQPLALTPFQGLMYDYIRLERPPSPRI 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g0549 690 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 58 686 - -
Acco12g0549 690 Pfam Rhamnogalacturonate lyase family 44 249 IPR010325 -
Acco12g0549 690 Pfam Polysaccharide lyase family 4, domain II 406 478 IPR029413 -
Acco12g0549 690 Pfam Polysaccharide lyase family 4, domain III 492 682 IPR029411 -
Acco12g0549 690 SUPERFAMILY Galactose mutarotase-like 59 343 IPR011013 GO:0003824|GO:0005975|GO:0030246
Acco12g0549 690 CDD RGL4_M 382 480 IPR029413 -
Acco12g0549 690 Gene3D - 379 475 - -
Acco12g0549 690 Gene3D - 489 682 - -
Acco12g0549 690 CDD RGL4_N 58 342 - -
Acco12g0549 690 SUPERFAMILY Galactose-binding domain-like 489 683 IPR008979 -
Acco12g0549 690 SUPERFAMILY Starch-binding domain-like 378 481 IPR013784 GO:0030246
Acco12g0549 690 Gene3D - 55 353 IPR014718 GO:0030246
Acco12g0549 690 CDD RGL4_C 494 683 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g0549 Acco-ChrAcco12 4955332 4966585 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g0549 60 685 Polysaccharide Lyase AT1G09890 56.121 0.0 708