Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g0548 ATGCAAATGCGTGCACGGTTTTTGAAGCTACCCATTAAGATTTCAAGAGAATTTAGTAACGAAGAGAAATCGAGAGAGAGGAGAGAGACATCCTTAAAGTACATAGTTGGCCTTTCGTCTTCCTTGGTTTGGTTTTGGAGGAAGAAGATGAAGAAGGTAGGTGAGATCAGAAAACGGGTTTTCTTGCTGTGGTGGTTTGGAATTACTGTGAAGTTCTGTTTCTTGCTGGTTGCTTGTTTCTCTCACGACGAGACCTCATTTAGAAGAGAGTTGAGGGGAATAACAAACGCTTCAAAACCCAGAGGGCCTACAATTTCTGCAGTGAAGCTTAATACAGAGGATCATGGCCAGGTGGTGATTGAGAATGGCATTGTTCACATCACGCTGTCCAGCCCCGAGGGGTATATTCTTGGAATCTCATTTGATGGAATCGACAATGTACTAGAATCTCGTAATGAAGAACCAGACAGAGGGTATTTTGATGTGGTCTGGAATGAGCCTGGGACAAACAGCACTTTTCAGAGAATCCATGGGACCGAATTTTCAGTAGTATCATTGGACGACAACCAAGTGGAGATTTCGTTTGTAAGAACATGGTCACCTTCCCTGGAAGGTCAAAATGTTCCCATAAACATAGACCAAAGGTATATATTGCGAAGAGGCGATTCTGGGTTTTACTCTTACACAATATTTGAACGCCCAGAAGGATTTCCAGCAGTGGAGGTTGATCAAATCAGGAATGTTTTCAAGCTCCAGGAAGAAAGGTTCGTGTACATGGCTATATCAGACACAAGGCAGAGATACATGCCAAGCATGAAAGACATAAAAACTGGGCAACCTCTGGCTTATCCTGAAGCTGTTCTTTTAACCAATCCATCTAATGAAGACTTTAGAGGAGAGGTGGACGACAAGTATCAGTACTCATGCGAGAATAAAGAAAATAGAGTGCATGGTTGGATTAGCGTTAATGCTGAAGCCCCCATGGGCTTTTGGGTAATTACACCCTCTAACGAGTTTCGCAATGCTGGGCCCATCAAGCAAGACCTCACCTCTCATGTGGGCCCATTTTCCCTCTCTATGTTTGTGAGCACTCACTATGCTGGGAAGGAAGTGACTATGGAATTTCAAGAAGGAGAGACTTATAAGAAGGTTTTTGGCCCTATTTTTTTGTATCTTAACTCTGTTCCAAACTCTCAGAACCCACTAACACTCTGGACAGATGCCGTACAACAGATGTCTAAAGAAGTCAAAAGGTGGCCTTATGATTTTCCTCAATCACAAGCTTATATTCCACCTAGTCAACGTGGGACTGTGTTTGGAAGATTACTGGTTCAAGATTGGTATATCAGAGGAGGCAGATTTCAAAATGCTGACTCTGCATATATTGGTCTTGCTCTTCCTGGTGCTGCAGGGTCATGGCAAAGAGAAAGCAAGGGCTATCAGTTTTGGACCCAAGCAAGCAAGAAGGGCTATTTTGTGATAAAAAATGTTGTTCCTGGAGATTACAACTTGTTTGCATGGGTTCCTGGCTTTATTGGTGATTACCGATATAATGCTACGATCACCATAACACCAGGTCGAGCAATCAAGTTGGATTCACTTGTATATAATCCTCCAAGAAGTGGATCCACTGTTTGGGAAATTGGATTCCCAGATCGCTCTGCTGCAGAATTCTATATCCCTGACCCTTACCCTACTCTCATGAACAAATTATACAATGAAAAGCCCAAAGAGAAGTTTAGACAATATGGGTTATGGGAACATTATGCAGATTTATATCCAAACAGTGATCTGGTCTATACTATTGGTGTTAGTTCATATGATCAAGATTGGTTCTATGCTCATGTTACAAGGCTCATAGGAAATAAGACATACGGGGCAACGACATGGCAGATTAGATTTAATCTTCAAAATGAACCATTCAAAGGAAGTTACACCCTCCAACTAGCCTTAGCAGCAGCCGCTAATTCTGACCTAAAGATTTGGATTAATGGGCAAGGTAATGGTCCTGCTCTGTTTCAAACTGGGAAATTTGGGGGAGACAGTGCCATACCAAGGCATGGAATCCATGGATTGTACTGGTTGTTCAGCATTGGTGTCCCAAGCGATGTTTTGGTGAAAGGGAATAACACTATCTATCTGCAACAGTCATTTGCCATAAATCCCTTTCAAGGGGTTATGTATGACTATATACGTTTAGAAAGACCACCAACTCTAAGGACTTGA 2226 0.4227 MQMRARFLKLPIKISREFSNEEKSRERRETSLKYIVGLSSSLVWFWRKKMKKVGEIRKRVFLLWWFGITVKFCFLLVACFSHDETSFRRELRGITNASKPRGPTISAVKLNTEDHGQVVIENGIVHITLSSPEGYILGISFDGIDNVLESRNEEPDRGYFDVVWNEPGTNSTFQRIHGTEFSVVSLDDNQVEISFVRTWSPSLEGQNVPINIDQRYILRRGDSGFYSYTIFERPEGFPAVEVDQIRNVFKLQEERFVYMAISDTRQRYMPSMKDIKTGQPLAYPEAVLLTNPSNEDFRGEVDDKYQYSCENKENRVHGWISVNAEAPMGFWVITPSNEFRNAGPIKQDLTSHVGPFSLSMFVSTHYAGKEVTMEFQEGETYKKVFGPIFLYLNSVPNSQNPLTLWTDAVQQMSKEVKRWPYDFPQSQAYIPPSQRGTVFGRLLVQDWYIRGGRFQNADSAYIGLALPGAAGSWQRESKGYQFWTQASKKGYFVIKNVVPGDYNLFAWVPGFIGDYRYNATITITPGRAIKLDSLVYNPPRSGSTVWEIGFPDRSAAEFYIPDPYPTLMNKLYNEKPKEKFRQYGLWEHYADLYPNSDLVYTIGVSSYDQDWFYAHVTRLIGNKTYGATTWQIRFNLQNEPFKGSYTLQLALAAAANSDLKIWINGQGNGPALFQTGKFGGDSAIPRHGIHGLYWLFSIGVPSDVLVKGNNTIYLQQSFAINPFQGVMYDYIRLERPPTLRT 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g0548 741 CDD RGL4_M 434 534 IPR029413 -
Acco12g0548 741 SUPERFAMILY Galactose-binding domain-like 541 734 IPR008979 -
Acco12g0548 741 CDD RGL4_C 546 734 - -
Acco12g0548 741 CDD RGL4_N 111 394 - -
Acco12g0548 741 Gene3D - 541 734 - -
Acco12g0548 741 SUPERFAMILY Starch-binding domain-like 430 532 IPR013784 GO:0030246
Acco12g0548 741 Gene3D - 430 533 - -
Acco12g0548 741 Pfam Rhamnogalacturonate lyase family 107 301 IPR010325 -
Acco12g0548 741 FunFam Rhamnogalacturonate lyase B 431 531 - -
Acco12g0548 741 Gene3D - 110 413 IPR014718 GO:0030246
Acco12g0548 741 Pfam Polysaccharide lyase family 4, domain II 458 530 IPR029413 -
Acco12g0548 741 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 109 737 - -
Acco12g0548 741 Pfam Polysaccharide lyase family 4, domain III 544 733 IPR029411 -
Acco12g0548 741 SUPERFAMILY Galactose mutarotase-like 112 398 IPR011013 GO:0003824|GO:0005975|GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g0548 Acco-ChrAcco12 4945627 4951113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g0548 105 736 Polysaccharide Lyase AT1G09890 54.560 0.0 711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco11g1194 11 25387424 25395173 Acco12g0548 12 4945627 4951113 CCT