Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g0539 ATGGGAAGAGGGAAGATTGAGATAAAAAGGATTGTAGATAGCGCAAGCAGGCAAGTGACTTTCTCGAAAAGGAGAAAGGGATTGTTGAAGAAAGCGACGGAGCTTTCAATTCTTTGTGATGTAGAAGTTGGACTCGTCATTTTCTCCAGCACTGGAAGGCTTCATGAATATGCCACCACCAGCATTAAATCAGTGGTTGAGAGATATAACAGTTGTAAGGAGGAACACGAACGACTGACGAATCCTGAATCAGAGGTGAAGTTCTGGGAAAGGGAAGCTGAAATATTAAGGCAGCAAGTGCATAATCTTCAAGAAAACCACAGGAAATTAATGGGAGAGCAGCTTTATGGTTTGAGTGTTAAGAACCTACAAGATATAGAGAATCAACTGGAGATTAGTCTCCGAGGTGTCCGCATGAAAAAGGAACAAATTCTTACAGAAGAAATCCACGAGCTGAGAAGAAAGGGAAACGCTATCCATCAGCAAAATTCAGAACTCTATAAGAAGGTAAACGTCATTCAACAGGAAAACATGCAACTATACAATGAGGCAGCAAGCAGAAATGCTTTCATTTCTTATGGTGTGCATGGAGATCAAGAACATCTACAAGCAATGACCCAACTTCAGTTATCGCAGCCTGAACAAGAAGCTCATCACAAGACATCAGGCGGTGCTACAAGATAA 684 0.4152 MGRGKIEIKRIVDSASRQVTFSKRRKGLLKKATELSILCDVEVGLVIFSSTGRLHEYATTSIKSVVERYNSCKEEHERLTNPESEVKFWEREAEILRQQVHNLQENHRKLMGEQLYGLSVKNLQDIENQLEISLRGVRMKKEQILTEEIHELRRKGNAIHQQNSELYKKVNVIQQENMQLYNEAASRNAFISYGVHGDQEHLQAMTQLQLSQPEQEAHHKTSGGATR 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g0539 227 Gene3D - 13 93 IPR036879 GO:0003677|GO:0046983
Acco12g0539 227 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Acco12g0539 227 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Acco12g0539 227 Coils Coil 86 113 - -
Acco12g0539 227 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Acco12g0539 227 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Acco12g0539 227 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Acco12g0539 227 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 192 - -
Acco12g0539 227 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Acco12g0539 227 Pfam K-box region 82 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Acco12g0539 227 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Acco12g0539 227 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Acco12g0539 227 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Acco12g0539 227 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g0539 Acco-ChrAcco12 4845471 4853113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g0539 1 225 MADS-box Gene Family AT2G22630 58.333 6.45e-88 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Acco12g0539 K-box 4.4e-26 No_clan