Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g0531 ATGCATATGCCTCTTCTATTAAAGCCTGCCCTGTTTTTTGGGTCAGCGACTAGAGGAAGAAGCACAGAGAAAACCAGAGAGAAATTAATGGAGCTCACACAAGTTGGTTTTTTGGAAGAGTTATTTGCTCCAAGAAGAGGAGACTCATGGAATAATACCATCTCCTCTGGTTTAAATGAGCTCTTTCCTTCTACCTCTTGGTGTTTTGACTCTTTTGAAGACAACAACCCTTCAAATTTTTCTACCTTCAATAATCCTCCATTTTCTTCACTACCAGCTCCACTTTTAGACCACAGACTTGAATATAGTTCCTACCCATTTATTGATGGCTTCACGGGGAACACTGTTGACTCTGCACCACCACTTCAAGCTCATGAAGATGAAGATCTTGCCTTTCTGGGTTTTGAGAATCAGAGTTCTGAAGAAGGAAACACCACCCCCACCACCACCAACAATAATAATGCCACTAATTGCTGCAAAATCGAAGAACAAGCGTTCGAACAAGCTCCAGTGTTCAACATGGGTGTGTGTTGTGGGGAGAAGAAACCCAAATCGAAGAAGCTAGAAGGTCAGCCCTCCAAGAATCTCATGGCAGAAAGAAGAAGAAGAAAACGCCTAAATGATCGCTTGTCCATGCTAAGATCAATTGTCCCCAAGATCAGCAAGATGGACAGGACATCTATTCTTGGAGACACCATAGATTACATGAAGGAGCTTCTGGAAAAGATAAGCCAGTTGCAGGAAGAAATGGAGAAGGAGGGTGAAAATAATGAGTTGAACTTCATAGGCATTTCCAAGGAGGGGAAGCCAAATGAAGTAATGGTAAGAAATTCCCCCAAGTTTGAGGTTGATAGGCGAGACCAGGACACAAGGATCAATATCTGCTGTGCCACAAAGCCTGGATTACTACTCTCAACAGTGAATACCTTGGAAGCATTAGGTCTTGAGATTCAACAATGTGTGATAAGTGGCTTCAATGATTTCACAATGCAAGCTTCTTGCTCAGAGGTGGCTGAGCAGAGAGCTTGTATGGGCTCTGAGGAGATTAAGGAAGCACTGTTCAGAAATGCAGGCTATGGTGGGAGATATCTGTAG 1095 0.4311 MHMPLLLKPALFFGSATRGRSTEKTREKLMELTQVGFLEELFAPRRGDSWNNTISSGLNELFPSTSWCFDSFEDNNPSNFSTFNNPPFSSLPAPLLDHRLEYSSYPFIDGFTGNTVDSAPPLQAHEDEDLAFLGFENQSSEEGNTTPTTTNNNNATNCCKIEEQAFEQAPVFNMGVCCGEKKPKSKKLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLEKISQLQEEMEKEGENNELNFIGISKEGKPNEVMVRNSPKFEVDRRDQDTRINICCATKPGLLLSTVNTLEALGLEIQQCVISGFNDFTMQASCSEVAEQRACMGSEEIKEALFRNAGYGGRYL 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g0531 364 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 190 239 IPR011598 GO:0046983
Acco12g0531 364 Coils Coil 229 256 - -
Acco12g0531 364 Pfam Helix-loop-helix DNA-binding domain 196 239 IPR011598 GO:0046983
Acco12g0531 364 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 193 253 IPR036638 GO:0046983
Acco12g0531 364 Gene3D - 182 257 IPR036638 GO:0046983
Acco12g0531 364 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 87 358 - -
Acco12g0531 364 SMART finulus 196 245 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g0531 Acco-ChrAcco12 4760923 4762313 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g0531 181 364 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 69.022 2.20e-76 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Acco12g0531 HLH 8e-10 No_clan