Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g0525 ATGCTATCTGCGGATGAACTCACCGACTTAGGAAGAATTGATGTGAGTGTGTATAGTTGGACCCCGATGTCACCACCGGTTCCGACTGCTCAGGAGGAAGGGCAGAGCAACAGCTCAACAATAACTTCTTCACGATCTGAGGATTGTATCTCCCAAAATGTCACTGGATTAAAAGAACGCAATTACCTCGGGTTATCAGATTGTTCATCAGTGGACAGCTCTACCGTTCCAAGCGATTCAGATGAGAAAAGGGACAATCTGAATTTGAAGGCTACGGAATTGAGGTTGGGTCTTCCTGGATCCCAATCACCTGAAAGGGTCGATAGCTCAACAAAACTTGATGAGAAGCCACTGTTTCCCTTGCTTCCGACAAAAGATGGAATCTGCTCATTGTCCCTGAAAAATGTGATTACGGGCAACAAAAGGGGATTCTGTGACACCATGGACGGGTTCCCTGAGGGGAAGTTTCCCGGGAATTCTGGGGTAAATGTGCTGCTGTCTCCTAGATCTGTTAGAACTCAACCAACCACAACAAAAGAAATGCCAACTAAAGTGTTGCAAGAACGGCCATGTGCAACTAATGGAACAGGCCATAACAAAACAGATGCTTCTATTGGTGGTAGTGGTCCTGCCTCTAAGGCACAGGTTGTTGGTTGGCCTCCAATAAGATCATTTAGGAAGAACTCACTGGCTGTCACTTCAAAGAACAATGATGAAGTAGATGGTAAACTGAGTCCTGCTGCTCTCTTTGTGAAGGTGAGCATGGATGGAGCTCCTTATCTAAGGAAGGTTGACCTTAAGAGTTACAATACATACCAGGATCTGTCTTCTTCCCTTGAGAAAATGTTCAGCTGTTTTACCTTAGGTCAATGTGGTTCCCACGGAGCTCCAGGAAGAGAAATGTTGAGTGAGAGCAAGCTAAGGGACCTTCTGCATGGTTCAGAATATGTACTCACTTACGAAGATAAAGATGGTGATTGGATGCTTGTTGGGGATGTACCGTGGGAGATGTTTATTGACACATGCAAGAGGCTGAAAATCATGAAAGGTTCTGATGCTATTGGCTTAGCACCTAGGGCTATGGAGAAATCCAAGAGCAGGTGCTAG 1107 0.4544 MLSADELTDLGRIDVSVYSWTPMSPPVPTAQEEGQSNSSTITSSRSEDCISQNVTGLKERNYLGLSDCSSVDSSTVPSDSDEKRDNLNLKATELRLGLPGSQSPERVDSSTKLDEKPLFPLLPTKDGICSLSLKNVITGNKRGFCDTMDGFPEGKFPGNSGVNVLLSPRSVRTQPTTTKEMPTKVLQERPCATNGTGHNKTDASIGGSGPASKAQVVGWPPIRSFRKNSLAVTSKNNDEVDGKLSPAALFVKVSMDGAPYLRKVDLKSYNTYQDLSSSLEKMFSCFTLGQCGSHGAPGREMLSESKLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDTCKRLKIMKGSDAIGLAPRAMEKSKSRC 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g0525 368 ProSiteProfiles PB1 domain profile. 248 352 IPR000270 GO:0005515
Acco12g0525 368 MobiDBLite consensus disorder prediction 24 48 - -
Acco12g0525 368 Gene3D - 244 361 - -
Acco12g0525 368 SUPERFAMILY CAD & PB1 domains 246 349 - -
Acco12g0525 368 Pfam AUX/IAA family 92 359 IPR033389 -
Acco12g0525 368 MobiDBLite consensus disorder prediction 190 217 - -
Acco12g0525 368 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 87 355 IPR003311 GO:0005634|GO:0006355
Acco12g0525 368 MobiDBLite consensus disorder prediction 190 208 - -
Acco12g0525 368 FunFam Auxin-responsive protein 243 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g0525 Acco-ChrAcco12 4688000 4691127 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g0525 252 358 B3 DNA Binding Superfamily AT4G23980 28.972 2.03e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Acco12g0525 AUX_IAA 3.7e-88 CL0072