Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g0504 ATGGCTTCTCTTGGGAATCCCAGAAGCTGGGTTCCATACATGAACAATAAAGACTGTTCTCAAGGGTTCTGTAGTCTCTACTGTCCACAGTGGTGTTACATAGTGTATCCTCCTCCTCCTCCCTTTGAATTACCTGAAGAAAATTCAAGCCTTAACTTTTCACCTCTGGTTATAGCAGTCATCGGAATCATTGCCAGTGCTCTGCTTCTTGTGAGCTACTATACCATAATCTCCAAGTACTGTGGCAACCCAGAATCTTCAGATAGACAGAATCATAACGACCCTTCAAATGAAGTTGAACACTTTAACAGTCCTTCCCCTCACGAGCCATGGCAGGTGTCACCAAGTGGTCTGGACGAGGCTCTTATAAAGTCCATCACAGCGTGTAAGTACAAGAAAGAAGATGGGCTGATCTCTGTAACAGATTGCTCTGTTTGTCTCAGTGAGTTCAAAGATGATGAAAATATCAGGCTCTTGCCTAAGTGTAGCCATGCTTTTCATATCACTTGTATTGACACGTGGCTCAAATCTCACTCCTCTTGTCCTCTCTGTCGTGCTAGCATTTTCACCTTCAACGCTTCGGCTCTTTTGGCTTCTGATTCGACAACGGAGAATTCAAGTTTCGTGGAAAATCAACCTGGGAATGAGAACAATGAAGCAGTGGGTTCAGCCGTTGAAGAAGAAAGTGAAGAAACCAGACAACATGGTACAGCTCCGAAGCCTACATTGCGATCAATGAGTGATTTGGGCAATTTGCAGGGAAGGCATAGTGTGATTGAGATAAAAGATGAAGGGTTCGTTGAGCCATTTAGAAGGTCAGTTTCTATGGACCATTCATTTCAGAGTGGTAACAGAGTTGAAGAAGAAGAAGAAGGAAGCTCTGTGAATGAAGCAGGTCCCTCAAAGAGATCTCGAGGAGGAGAAAGCAGCAAATGTAACAGCAGAAGAAGGGTACTGCAGTGTGTATTGAGTCCGATTGTAATGAAGAGATCGTTTTCAGGTGGAAGATTCTCTATCAGCAGAGGAAGAAGGCAGGGGATAATCCCTATATGA 1053 0.4397 MASLGNPRSWVPYMNNKDCSQGFCSLYCPQWCYIVYPPPPPFELPEENSSLNFSPLVIAVIGIIASALLLVSYYTIISKYCGNPESSDRQNHNDPSNEVEHFNSPSPHEPWQVSPSGLDEALIKSITACKYKKEDGLISVTDCSVCLSEFKDDENIRLLPKCSHAFHITCIDTWLKSHSSCPLCRASIFTFNASALLASDSTTENSSFVENQPGNENNEAVGSAVEEESEETRQHGTAPKPTLRSMSDLGNLQGRHSVIEIKDEGFVEPFRRSVSMDHSFQSGNRVEEEEEGSSVNEAGPSKRSRGGESSKCNSRRRVLQCVLSPIVMKRSFSGGRFSISRGRRQGIIPI 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g0504 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 192 IPR013083 -
Acco12g0504 350 MobiDBLite consensus disorder prediction 282 296 - -
Acco12g0504 350 MobiDBLite consensus disorder prediction 97 111 - -
Acco12g0504 350 Pfam Ring finger domain 142 185 IPR001841 -
Acco12g0504 350 MobiDBLite consensus disorder prediction 204 219 - -
Acco12g0504 350 SUPERFAMILY RING/U-box 142 190 - -
Acco12g0504 350 MobiDBLite consensus disorder prediction 204 249 - -
Acco12g0504 350 CDD RING-H2_EL5-like 142 185 - -
Acco12g0504 350 PANTHER RING-H2 FINGER PROTEIN ATL16 41 317 IPR044600 GO:0016567|GO:0016740
Acco12g0504 350 MobiDBLite consensus disorder prediction 277 311 - -
Acco12g0504 350 SMART ring_2 143 184 IPR001841 -
Acco12g0504 350 FunFam RING-H2 finger protein ATL54 118 191 - -
Acco12g0504 350 MobiDBLite consensus disorder prediction 87 115 - -
Acco12g0504 350 ProSiteProfiles Zinc finger RING-type profile. 143 185 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g0504 Acco-ChrAcco12 4486805 4487857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g0504 1 241 C3H Transcription Factor Family AT3G03550 46.642 3.07e-70 221