Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g0501 ATGGGAAGACCACCATGTTGTGAGGAGAGTGGTGTGAAGAAAGGGCCATGGACGCCTGAAGAAGATGAGAAGCTTTTTAATTATATCAACAAACATGGGAGTGGAAATTGGAAAACAGTTCCGAAGCATGCGGGCCTCAATAGATGCGGCAAAAGCTGCCGGCTACGGTGGACCAACTATCTCAGGCCTGATATCAAGAGAGGCAAATTCACTGAAGAAGAGGAGAAATTGATCATCAACCTTCATTCTGTTCTAGGAAACAAGTGGTCGAAGATTGCAACGCATCTTCCAGGGAGGACTGATAATGAAATTAAGAATTTCTGGAACACCAACTTAAGGAAGAAGCTTCTGCAGATGGGTATTGATCCAGAAACTCACAAGCCAAGAACTGAGTTCAAGCATCTCTTGAATCTCTCCCAGTTACTTGGCATGGCTAATAACAACGACAACTTGATGAGCCCTTGGAGCCAAGCAACTCTTCTGGGTTTACAGCAACCAGATTTGATTCAGCAGTTAGTCCAACTCCAACTTCTGCAGAATTTGTTGCAGCTCATAAATGGCGATTCATCTTTTGTCAATAACATGCAGAGTAGTCTCCCAGTCTTGGGCAATCACAGTTCGATCAATAATAACCCAACAGAATTATATGCGAGCCCTGCTCTGTTTCCTTCGGCACCGAGTGAATCAGGGCAGGATGTTTCAGAAGCATGGACAGACCTAGAAGGAGCATCATCAGATCAACAAGTTTCGGGTATTAATAATACTAGTCTCAGTAGGATAACATCACATGACATAAGTCAAGTAGAAATTCTACTTCCTACGTTTGATTCTTCAACCACCTTTAATCAAAGGGAGGTTAACGTTAGCCCTATTGTTACACATGAAGTGGCAACCCAGCCAACAACTTCACCCACAATCTCTGATATTGATAATTGGGAGAAGCTCTTGGAAGATTATGATACAAACGATGCCCTCTGGAAAGAACTCTTAGACTTCACGTCCACTTCCGAATCGCCCATCTCTTGGTAG 1029 0.4344 MGRPPCCEESGVKKGPWTPEEDEKLFNYINKHGSGNWKTVPKHAGLNRCGKSCRLRWTNYLRPDIKRGKFTEEEEKLIINLHSVLGNKWSKIATHLPGRTDNEIKNFWNTNLRKKLLQMGIDPETHKPRTEFKHLLNLSQLLGMANNNDNLMSPWSQATLLGLQQPDLIQQLVQLQLLQNLLQLINGDSSFVNNMQSSLPVLGNHSSINNNPTELYASPALFPSAPSESGQDVSEAWTDLEGASSDQQVSGINNTSLSRITSHDISQVEILLPTFDSSTTFNQREVNVSPIVTHEVATQPTTSPTISDIDNWEKLLEDYDTNDALWKELLDFTSTSESPISW 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g0501 342 CDD SANT 69 112 IPR001005 -
Acco12g0501 342 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Acco12g0501 342 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Acco12g0501 342 CDD SANT 16 61 IPR001005 -
Acco12g0501 342 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Acco12g0501 342 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Acco12g0501 342 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Acco12g0501 342 PANTHER F14D16.11-RELATED 1 266 - -
Acco12g0501 342 FunFam Transcription factor MYB39 69 130 - -
Acco12g0501 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Acco12g0501 342 Gene3D - 13 66 - -
Acco12g0501 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Acco12g0501 342 FunFam MYB-related transcription factor 13 66 - -
Acco12g0501 342 Gene3D - 69 136 - -
Acco12g0501 342 SMART sant 13 63 IPR001005 -
Acco12g0501 342 SMART sant 66 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g0501 Acco-ChrAcco12 4442743 4444264 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g0501 1 331 MYB Transcription Factor Family AT5G16770 43.732 6.04e-82 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Acco12g0501 Myb_DNA-binding 1.6e-18 CL0123