Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g0500 ATGGGTAGGCCACCGTGTTGTGAGGAGACAGGTGTGAAGAAAGGGCCATGGACGCCTGAAGAAGATGAGAAGCTCGTGGCTTATATCAGTAAACATGGTAGTGGAAGCTGGAGATCACTTCCAAAGCATGCCGGTCTCAATCGATGCGGCAAGAGCTGCCGGCTAAGGTGGACCAATTATCTCAGGCCTGATATCCGGAGAGGCAAATTCACCGAAGAAGAGGAGAAACTAATCATCAACCTTCATTCTGTTCTTGGAAACAAGTGGTCGAAGATTGCAACGCATCTTCCAGGGAGGACTGACAATGAGATTAAGAATTTCTGGAACACGAATTTAAGGAAGAAACTTCTTCAGATGGGTATTGATCCAGAAACTCACAAGCCTAGAACTGACTTGAAGCATCTCTTGAATCTCTCCCAGTTACTTGGCATGGCTAATAACAACAACAACTTGATAAGTCCTTATTGGAGCCATGCGGGTCTTCTGGGTTTGCAGCAACCAGATTTGGCTCATCAATTAGTCCAAGTCCAACTTGTGCAGAATCTGTTGCAGCTCATAAATGGCAATTCATCGTTGCTCAGTAACATGCAGAGTGTTCTACCACTCTTGGGCAATCACAACAGTTTGATCAATAACCTAATAGAAGCAGATACAACAAATGGTCCGAACTATACTCTCCCCGACAACTTGAGAGACCAAGAATTACATGCAAGCCCTGCTCTATTTCCTTTAGCACGAAGTGAATCAGGCCAGGATATTTCAGAATCAGGGACAGATCTTGAAGGAGCGTCAGATCAACAAGTTTTGGGTATTAATAACAGTATCAGCAGGATAACTTCACATGAAATTAATCAAGCTGATGAGAATCCATTTGGTGCAACCAGTTCTGGCAACTTCAACCAAATGGAAGGAAGTTCCAACCAGCAGTCACTTCCATCCAGAGTCTTTGATGCTTGGGAAAAGCTCTTGGAAGATGATGATGCAAGCGATTCCTATTGGAAAGAACTTTTAGATTTGACGTCCACTTCCACATCGCCGATTTCGTGGTAG 1050 0.4419 MGRPPCCEETGVKKGPWTPEEDEKLVAYISKHGSGSWRSLPKHAGLNRCGKSCRLRWTNYLRPDIRRGKFTEEEEKLIINLHSVLGNKWSKIATHLPGRTDNEIKNFWNTNLRKKLLQMGIDPETHKPRTDLKHLLNLSQLLGMANNNNNLISPYWSHAGLLGLQQPDLAHQLVQVQLVQNLLQLINGNSSLLSNMQSVLPLLGNHNSLINNLIEADTTNGPNYTLPDNLRDQELHASPALFPLARSESGQDISESGTDLEGASDQQVLGINNSISRITSHEINQADENPFGATSSGNFNQMEGSSNQQSLPSRVFDAWEKLLEDDDASDSYWKELLDLTSTSTSPISW 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g0500 349 MobiDBLite consensus disorder prediction 287 311 - -
Acco12g0500 349 CDD SANT 69 112 IPR001005 -
Acco12g0500 349 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Acco12g0500 349 CDD SANT 16 61 IPR001005 -
Acco12g0500 349 FunFam Transcription factor MYB39 69 130 - -
Acco12g0500 349 Gene3D - 68 135 - -
Acco12g0500 349 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 61 IPR017930 -
Acco12g0500 349 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Acco12g0500 349 SMART sant 13 63 IPR001005 -
Acco12g0500 349 SMART sant 66 114 IPR001005 -
Acco12g0500 349 Gene3D - 12 67 - -
Acco12g0500 349 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Acco12g0500 349 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Acco12g0500 349 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Acco12g0500 349 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Acco12g0500 349 FunFam MYB-related transcription factor 13 66 - -
Acco12g0500 349 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g0500 Acco-ChrAcco12 4432310 4434173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g0500 1 347 MYB Transcription Factor Family AT3G02940 42.938 3.67e-82 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Acco12g0500 Myb_DNA-binding 4.6e-17 CL0123