Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g0465 ATGATTTCCATACAATTTGAGTTTCTCCGTTCAAGTTTACCCGCACAATGTTGTAATTGCGTCATAACCCATGGATCACAGAAGGCAACCCGAGGACTCGTTTTCGTTCTCTTATCTTTTCAATCTCGAGGCGGGGCGATCGCAAATCACAGCAATGGGAGTATGCGTGAGGTAAATTTTCTGAAGAAGAGGAAGTGGTCTCAAAACAGTGACGACGAAGACAAGGGTAATTTTTGTGGAATGCCCATGACTGAGGAGCGATACCGATCAATGCTTGGGGAACATATTCAAAAATACAAGAGGGGGTATAAAGATATCTCATTCCGTTCTTCCCAAAATCGTGTTAATGCTCAACTTCTTAAAAGTAACATAGGTTTGAAAGCGCGGAAGTTAGTGAATGAGCGCCGAAGAGTAATACGTGTTCTGGAGACTACTACATCTGAGTGGCCTAATGATGTTAATCCTCAGAAACCTGTAAACTACCGTGATGCAGAATTCAGACAGCAATATGGACCTGATAGGTCTAATTTTTCTTCCCTGTTGCCTGGAACTGTCTCTGAGGCCATTTCGTTAGACCTTGGAGATGGGGTCACTTATAAAATTCCTCCTATTTATGACTTGGAAGGTTCAGCAGCAATGCTGAACCTTCCAAGTTTATCAGATATTGAAATTGAGGAATTTTACTTAAAAGGTACCTTGGATTTGGGATCCTTGGCTGCGATGATGGCTTCTGATAAGAGGGGTGTGACTAGAAACCGAGCAGGCATGGGGGAAACCTTACCTCAATATGATTCACTTCAGGCACGATTGAAGGCCATGTCAACTTCTAATTCACCTCATCAATTTAGTCTCAAAGTATCTGATGTTGGTTTGAATTCTTCCATCCCAGAGGGAGCTGCTGGAAATATTAAGCGATCTATTTTGTCAGAGGGTGGTGTATTGCAGGTTTATTATGTGAAGGTTAAAGAGAAATGTGATACATATGAGATCAGTGAAAGAAGCCTACCTAAGAGGCAAAAGGTAAAGAAAGACCCTTCTTTGATTGAGAAGGAGGAAATGGAAAGAATTGGAAAAGTCTGGGTAAATATTGTAAGAAGAGACATACCAAAGCATCATAGGTTTTTTACTGGTTTCCATCGAAAGCAACTTGCTGATGCCAAGAGGTTCTCAGAGAATTGTCAAAGAGAGGCATGCTCCGTCTCCTCATTTGCGCATATTTCTTCTGTCACAATGAAAGTGAGTAGATCACTTAAATTCAAGAAGAGTGTAGCCATTCGCACCCGAAAACTAGCTAAAGATGTTTTGCTGTTCTGGAAACGATCAGATAAGGAGATGGCAGAATTGAGGAAAAAAGAGGAGAAAGAAGCTGCAGAAGCTTTGAAGCGTGAACAGGAGCTTAGAGAAGCAAAGAGGCAGCAGCAAAGGCTGAATTTCCTCATACAGCAAACTGAGCTATACAGTCACTTTATGCAGAACAAGTCGAACATGCTGTCCTCTGATGTTTCACCTACAGTAGATGAAAATGCAGACGATCAAGATGCAGAACTTGGCTCTTCAGATGATGGGCCTTGCAAGGAGGAAGATCCTGAAGAAGCTGAACTGAAGAAGGAAGCTTTGAAGGCTGCTCAAAAAGCTGTCTCTAAGCAGAGACAGTTGAAGGGTGCTTTTGATAGTGAATGCTTGAGGCTGCGTCAGGCTGGTGAAACTGATGCACTTTCACAGGAAGTTGCAGGAGCAAGTAACATTGATCTGCAAACCCCCTCAACCATGCCTGTGGTATCAACAGTTCGGACACCAGATATGTTTAGAGGCTGTCTTAAAGGACATCAGCTAAAAGGTCTTCAGTGGTTAGTTAATTGTTATGAGCAGGGTCTGAATGGTATACTTGCTGATGAAATGGGACTTGGAAAGACCATTCAAGCCATAGCTTTTTTAGCCCATTTAGCTGAGGAGAAAAATATATGGGGACCATTTTTGATTGTTGCACCTAAATCAGTATTGAACAATTGGAATGAAGAACTCGAGCGCTTCTGCCCTGAAATGAAAGCTCTTCCTTACTGGGGTAAGGTTCATGAGCGGACAGTACTTAGGAAAAGTATTAAGCCAAAGGATCTTTGTCGTAGGGAAGCGAAATTCCACATTCTCATCACAAACTACCAGCTACTAGTATCTGATGAGAAGTATTTTCGGCGTGTGAAATGGCATATAAGATGGAAGACACTCCTCAGTTTTAATTGTCGGAATCGCCTGCTGCTGACTGGTACACCAATTCAGAATAATATGGCAGAATTGTGGGCTCTTCTGCACTTCATCATGACAACTTTATTCGATAGCCATGAACAGTTTAATCAATGGTTTTCAAAAGGAATTGAGAACCATACAGAACATGGAGGTACTTTGAATGAACATCAACTTAACAGATTGCATTCTATTCTAAAGCCTTTCATGCTGCGACGATTTAAAAAAGATGTATTATCCGACCTGACTGGGAAAAGAGAGGTTACAGTGTACTGCAAGCTGAGTTCTCAGCAAGAAGCTCTCTATCAAGCAACCAAGAATAAAATATTTCTTGCTGGGTTGTTTGATAGTACTCGTGGGCAGCTCAACTATGAAAGAGTGCTGAATTTAATGAAAATTGTTATGCAACTAAGAAAGATTTGCAACCATCCAGAGTCGATTGAGAGGAGGGAGGGAACCACATTCTATAATTTTGCAGAGATTCCAAATTCCCTTCTGCCTCCTCCATTTGGGGAGTTGGAGGATGTATACTATCGTGGGGGTCATAATCCAATATCATACAAGGAGACTAGTATGGGTAGTTCAATACTTCAATTTCTAAAGAAAGTTTCACTTGTAAAGTTGGCTGCAGTTGGCTTGAGGTTAAGAGGAATTGAAATAGGAGGAAGAAAAGTGATAGAGTATGATATGTAA 2931 0.4139 MISIQFEFLRSSLPAQCCNCVITHGSQKATRGLVFVLLSFQSRGGAIANHSNGSMREVNFLKKRKWSQNSDDEDKGNFCGMPMTEERYRSMLGEHIQKYKRGYKDISFRSSQNRVNAQLLKSNIGLKARKLVNERRRVIRVLETTTSEWPNDVNPQKPVNYRDAEFRQQYGPDRSNFSSLLPGTVSEAISLDLGDGVTYKIPPIYDLEGSAAMLNLPSLSDIEIEEFYLKGTLDLGSLAAMMASDKRGVTRNRAGMGETLPQYDSLQARLKAMSTSNSPHQFSLKVSDVGLNSSIPEGAAGNIKRSILSEGGVLQVYYVKVKEKCDTYEISERSLPKRQKVKKDPSLIEKEEMERIGKVWVNIVRRDIPKHHRFFTGFHRKQLADAKRFSENCQREACSVSSFAHISSVTMKVSRSLKFKKSVAIRTRKLAKDVLLFWKRSDKEMAELRKKEEKEAAEALKREQELREAKRQQQRLNFLIQQTELYSHFMQNKSNMLSSDVSPTVDENADDQDAELGSSDDGPCKEEDPEEAELKKEALKAAQKAVSKQRQLKGAFDSECLRLRQAGETDALSQEVAGASNIDLQTPSTMPVVSTVRTPDMFRGCLKGHQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAIAFLAHLAEEKNIWGPFLIVAPKSVLNNWNEELERFCPEMKALPYWGKVHERTVLRKSIKPKDLCRREAKFHILITNYQLLVSDEKYFRRVKWHIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMTTLFDSHEQFNQWFSKGIENHTEHGGTLNEHQLNRLHSILKPFMLRRFKKDVLSDLTGKREVTVYCKLSSQQEALYQATKNKIFLAGLFDSTRGQLNYERVLNLMKIVMQLRKICNHPESIERREGTTFYNFAEIPNSLLPPPFGELEDVYYRGGHNPISYKETSMGSSILQFLKKVSLVKLAAVGLRLRGIEIGGRKVIEYDM 976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g0465 976 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 618 774 IPR014001 -
Acco12g0465 976 PANTHER HELICASE SRCAP-RELATED 573 910 - -
Acco12g0465 976 Pfam DNA-binding domain 354 495 IPR020838 GO:0003677
Acco12g0465 976 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 821 893 IPR027417 -
Acco12g0465 976 MobiDBLite consensus disorder prediction 496 531 - -
Acco12g0465 976 ProSiteProfiles DBINO domain profile. 359 496 IPR020838 GO:0003677
Acco12g0465 976 SMART ultradead3 602 785 IPR014001 -
Acco12g0465 976 Pfam SNF2-related domain 739 893 IPR000330 GO:0005524|GO:0140658
Acco12g0465 976 FunFam Photoperiod-independent early flowering 1 578 842 - -
Acco12g0465 976 Coils Coil 443 482 - -
Acco12g0465 976 Gene3D - 603 828 IPR038718 -
Acco12g0465 976 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 588 819 IPR027417 -
Acco12g0465 976 Gene3D - 829 899 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g0465 Acco-ChrAcco12 4078053 4085991 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g0465 627 902 RAD5 or RAD16-like Gene Family AT5G43530 26.923 1.17e-18 90.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Acco12g0465 SNF2_N 1.6e-51 CL0023