Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g0460 ATGGGTAAGAAACAGCATGATGCCGCCAGAGTCAGCGAGCTAGTAGCCGAGGAATCCCACGACTGCTCGGCAATCAAAGCAGAGAAGAAGAAAATGAAGAGGAAGAAAATTAAGCAAAACGAAGGTAGTCCCAAAAGAAAGCTCGAGGAAGTTGAGGTCCAGGATAGCGCAGAACCAAAAACGAAGAAGAGTAAGAAAGATAAGAAATCCAAAAAAAGCGCGGAGGAAACTGTAGCCGTCGAGACTAATGGCGCCGAGAACGGCGGAGAGGATGAGTCGGTGAGAGATGAGCATGTGGTGGTTACTGGAGAGAATATTAAGGATGAGAAGTATGCTCCCACAACGACATTTTCCGCATCGGGGCTTCCAAGGGAAGTCTTGGAGTGCTGCAAAAGTTTTGAAAAGCCATCCCCTATTCAGTCCCGAGCGTGGCCTTTCTTGTTGAATGGTCGTGATTTAATTGGCATTGCGGCTACTGGGTCAGGAAAAACATTAGCTTTTGGAATACCAGCAATGATGCATGTTTTGGGCAAGCGCAAGGGTAAAGCGTCGAAGGGTCGGAATCCTCTCTGCCTTGTGCTCTCTCCCACTAGAGAGTTGGCTCAACAAATTTCAGATGTTATGTGTGATGCTGGGACGTCTTGTGGGGTGGAATCTATTTGTTTATATGGTGGAACCTCCAAAGGGCCACAAATATCTTCGTTAAAATCTGGCATTGACATTGTCATTGGAACTCCTGGTCGTATAAAGGATCTGATCGAAATGGGTGTTCTTTCTTTGAAAGAGGTTTCTTTTGTGGTGCTTGATGAAGCTGATCGAATGCTTGATATGGGATTTGAACAAATAGTTCGCTCCATACTGGGTCAGACTTGCTCTGTTCGTCAGATGGTTATGTTCAGTGCTACATGGCCTCTAGCAGTCCATAACTTAGCTCAAGAGTTTATGGATCCCAACCCTGTGAAAGTTGTTATAGGATCAGAGGACTTAGCTGCCAATCATGATGTTATGCAGATAGTTGAGGTCTTGGATGATCGTTCACGAGATAAACGCCTGGTTGCTTTGCTAGAAAAGTACCACAAATCGCAGAGGAATAGAGTATTGGTTTTTGTCTTGTACAAAATGGAAGCCACACGGGTTGAAAAGATGCTCCATCAAGGGGGTTGGAAGGTTGTCTCGATACATGGGGACAAGTCGCAACATGAACGTACAAAGGCGCTATCATTATTCAAGAATGGAAGTTGTCCTTTGATGATTGCCACTGATGTGGCTGCACGGGGATTGGATATTCCTGATGTTGAAGTTGTGATCAACTACAGTTTTCCTTTAACTACCGAAGATTATGTTCATAGAATTGGTAGGACAGGGCGAGCCGGGAAGAAAGGTGTTTCCCATACGTTTTTCACACAGCAGAACAAGGGACTGGCTGGGGAGCTAGTGAATGTTTTAAGAGAAGCAAATCAAATTGTGCCTGATGCTCTCCTGAAGTTTGGCACGCATGTAAAGAAAAAGGAGTCCAAGCTGTACGGAGCTCACTTTAAGGAGATTACTGCTGATGCTCCGAAGTCAAAGAAGATAACTTTTGACGATTCTGACGAAGATTAA 1602 0.4488 MGKKQHDAARVSELVAEESHDCSAIKAEKKKMKRKKIKQNEGSPKRKLEEVEVQDSAEPKTKKSKKDKKSKKSAEETVAVETNGAENGGEDESVRDEHVVVTGENIKDEKYAPTTTFSASGLPREVLECCKSFEKPSPIQSRAWPFLLNGRDLIGIAATGSGKTLAFGIPAMMHVLGKRKGKASKGRNPLCLVLSPTRELAQQISDVMCDAGTSCGVESICLYGGTSKGPQISSLKSGIDIVIGTPGRIKDLIEMGVLSLKEVSFVVLDEADRMLDMGFEQIVRSILGQTCSVRQMVMFSATWPLAVHNLAQEFMDPNPVKVVIGSEDLAANHDVMQIVEVLDDRSRDKRLVALLEKYHKSQRNRVLVFVLYKMEATRVEKMLHQGGWKVVSIHGDKSQHERTKALSLFKNGSCPLMIATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTQQNKGLAGELVNVLREANQIVPDALLKFGTHVKKKESKLYGAHFKEITADAPKSKKITFDDSDED 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g0460 533 MobiDBLite consensus disorder prediction 42 76 - -
Acco12g0460 533 CDD DEADc 133 322 - -
Acco12g0460 533 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 144 321 IPR014001 -
Acco12g0460 533 Pfam DEAD/DEAH box helicase 138 307 IPR011545 GO:0003676|GO:0005524
Acco12g0460 533 Pfam Helicase conserved C-terminal domain 349 458 IPR001650 -
Acco12g0460 533 Gene3D - 58 325 IPR027417 -
Acco12g0460 533 SMART helicmild6 377 458 IPR001650 -
Acco12g0460 533 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 65 493 - -
Acco12g0460 533 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 115 141 IPR014014 GO:0003724
Acco12g0460 533 FunFam ATP-dependent RNA helicase RhlB 325 501 - -
Acco12g0460 533 Gene3D - 326 500 IPR027417 -
Acco12g0460 533 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 471 IPR027417 -
Acco12g0460 533 SMART ultradead3 132 338 IPR014001 -
Acco12g0460 533 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 346 497 IPR001650 -
Acco12g0460 533 MobiDBLite consensus disorder prediction 1 92 - -
Acco12g0460 533 MobiDBLite consensus disorder prediction 1 28 - -
Acco12g0460 533 CDD SF2_C_DEAD 335 467 - -
Acco12g0460 533 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 267 275 IPR000629 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g0460 Acco-ChrAcco12 4034415 4039761 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g0460 113 487 Eukaryotic Initiation Factors Gene Family AT3G19760 31.830 7.63e-56 191