Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g0413 ATGCCCGCGTCTGATGTCATGGGAATAAAAATGAAAACTCAGATGGAGCCCAACGACTTGTTACAGGAGCTTCTAAATGTAGAGGTTGAGATTCAAGATGTTGAAGATCAAATAAGTGCTTTGATTGAAAGACAAGAGCAGTTACATGAGAGAAAATCAGAGCTCAAGGCTATACTGGAAGCATGTGAAGAATCTGGAAACCAGGTCAATGATGGTGCTCCAAGTGCCGTGGAAAATTGGTCTGGGTTATTTGAATGGGATTCTCGAGCGGATGATGTCAGGCTGAATATTTTTGGCATTTCTGCATATCGTGCAAATCAAAGAGAGATAATTAATGCCATCATGAGTGGAAGGGATGTTCTGGTGATTATGGCTGCAGGTGGTGGCAAGAGTCTCTGCTACCAGCTTCCTGCTGTTCTCCGTGATGGGATTGCTCTTGTTGTCAGTCCTTTGCTTTCTTTAATTCAGGATCAGGTTATGGGTTTGACTGCTTTAGGGATCCTGGCATACATGTTGACATCAACAACAAATAAGGAAGGTGAGAAGTTCGTATATAAAGCTTTGGATAAGGGTGAGGGGGATCTCAAAGTATTGTACGTCACACCAGAAAAGATTTCAAAGAGCAAGAGATTTATGTCAAAACTAGAAAAGTGTCATCACGCAGGTCGTCTCTCTCTAATTTCAATAGATGAGGCACATTGCTGTAGTCAATGGGGTCATGACTTTAGACCTGACTACAAGAACCTTGGTATTCTCAAGACTCAATTCCCTAATGTTCCATTAGTTGCTTTGACTGCTACTGCTACTCAAAGAGTCCAAAATGATCTGATGGAAATGTTGCACATTCCGAGATGTGTGAAATTTGTCAGCACAGTTAACAGACCAAACCTTTTTTATGTGGTAAAGGAAAAGTCATCTGTTGGTAAGGCGGTTATTGATGAAATAGCTGGATTCATTCAAGAGTCGTATCCAAATAAGGAATCTGGTATAGTTTATTGTTTCTCCAGGAAAGAATGTGAACAGGTTGCAATGGAATTAAGGGAGAGGGGAATTTCTGCAGATTACTACCATGCAGATATGGATGTACATACTCGGGAAAAAGTTCATATGCGGTGGAGCAATGGGAAGTTGCAGGTCATAGTTGGTACGGTGGCATTTGGTATGGGAATCAACAAACCAGATGTCAGATTTGTCATCCACCACAGCTTGAGCAAATCAATGGAAACATACTACCAGGAAAGTGGTCGAGCCGGTAGAGATGGACTCCCATCTGAATGTGTTCTCTACTTTAGACCTGGTGATGTGCCCCGACAGAGTTCAATGGTTTTCTATGAAAACACGGGACTGCAGAATTTGTATGACATAGTACGATATTGTCAGTCCAAAAAAAAATGTCGCCGCAGTGCGATTTTCCAGCACTTTGCCGAGCCACCACAAGAGTGCAATGGGATGTGTGACAATTGTGCATTCCCGAGTGAGGTTAAAGAATTGGACGTCTCCAGCCATGCGAAGCTGATGGTTTCTTTGTTGCAAGATATGCAAGAAAATGATCGGAGATTAACAATGTTACAGTTGGGTGACAAAATGAAAATTAAGCAGAAGGAACTAGATTTTGAGTTGAAGAAAGAGGAAATGGAGAAGCTCATCTTACAGCTTTTACTAGAGAGGGTTTTGAAAGAAGAATTTCAGCATACAGCATATGCGACAAATGCTTATATTGCTGAGGGACCACTGGCCAAGCAAATATTGCTAGGAAAGAAGACTGTCAAAATTGAAGTTTCTAGTGAACAGAGAACTAAGCCTGGTGTCAGATCAGTTAAACGTAGCCATGGTTCCTCTGGTCTGGAGGTAAAGCTTGATGGGTTGAGGAAAGAATTGTCTTCCGTTCATGGAGGAATTCTCCCGCACTCCGTCTTAACCACTCAACAAATCAGCCTCATAAGTTCTCAAAAACCGAAATCACTAGAACAGCTAGAGAAGATAATTGGAAAACTAAAGACAGAAAAGTATGGAGATAGAATACTTGCGCAAATTGAAATGTACTCTGATTTCAAGCCTCCTGATGAGAGAAATGAACAAGACTCTGAAGTTAGAGCTGCAAAGAGGTCCAAAACCAAGAAACCTATTGTGCTTCTTGAGAGCAGTGAAGAAGATGAAGCATGA 2163 0.4156 MPASDVMGIKMKTQMEPNDLLQELLNVEVEIQDVEDQISALIERQEQLHERKSELKAILEACEESGNQVNDGAPSAVENWSGLFEWDSRADDVRLNIFGISAYRANQREIINAIMSGRDVLVIMAAGGGKSLCYQLPAVLRDGIALVVSPLLSLIQDQVMGLTALGILAYMLTSTTNKEGEKFVYKALDKGEGDLKVLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPNVPLVALTATATQRVQNDLMEMLHIPRCVKFVSTVNRPNLFYVVKEKSSVGKAVIDEIAGFIQESYPNKESGIVYCFSRKECEQVAMELRERGISADYYHADMDVHTREKVHMRWSNGKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECVLYFRPGDVPRQSSMVFYENTGLQNLYDIVRYCQSKKKCRRSAIFQHFAEPPQECNGMCDNCAFPSEVKELDVSSHAKLMVSLLQDMQENDRRLTMLQLGDKMKIKQKELDFELKKEEMEKLILQLLLERVLKEEFQHTAYATNAYIAEGPLAKQILLGKKTVKIEVSSEQRTKPGVRSVKRSHGSSGLEVKLDGLRKELSSVHGGILPHSVLTTQQISLISSQKPKSLEQLEKIIGKLKTEKYGDRILAQIEMYSDFKPPDERNEQDSEVRAAKRSKTKKPIVLLESSEEDEA 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g0413 720 Gene3D - 60 293 IPR027417 -
Acco12g0413 720 Coils Coil 712 720 - -
Acco12g0413 720 PANTHER DNA HELICASE RECQ FAMILY MEMBER 82 688 - -
Acco12g0413 720 MobiDBLite consensus disorder prediction 684 714 - -
Acco12g0413 720 Pfam Helicase conserved C-terminal domain 325 420 IPR001650 -
Acco12g0413 720 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 142 437 IPR027417 -
Acco12g0413 720 FunFam ATP-dependent DNA helicase 60 293 - -
Acco12g0413 720 FunFam ATP-dependent DNA helicase 494 594 - -
Acco12g0413 720 Pfam HRDC domain 618 677 IPR002121 GO:0003676
Acco12g0413 720 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 311 460 IPR001650 -
Acco12g0413 720 Gene3D HRDC domain 613 681 IPR044876 -
Acco12g0413 720 Gene3D - 494 595 IPR036388 -
Acco12g0413 720 Gene3D - 294 490 IPR027417 -
Acco12g0413 720 Coils Coil 531 551 - -
Acco12g0413 720 Pfam DEAD/DEAH box helicase 105 273 IPR011545 GO:0003676|GO:0005524
Acco12g0413 720 FunFam ATP-dependent DNA helicase 613 683 - -
Acco12g0413 720 Pfam RecQ zinc-binding 433 489 IPR032284 -
Acco12g0413 720 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 111 286 IPR014001 -
Acco12g0413 720 FunFam ATP-dependent DNA helicase 294 490 - -
Acco12g0413 720 CDD DEXHc_RecQ1 85 293 - -
Acco12g0413 720 SMART ultradead3 99 302 IPR014001 -
Acco12g0413 720 NCBIfam RecQ family ATP-dependent DNA helicase 96 531 IPR004589 GO:0004386|GO:0006310
Acco12g0413 720 Coils Coil 24 65 - -
Acco12g0413 720 ProSiteProfiles HRDC domain profile. 609 688 IPR002121 GO:0003676
Acco12g0413 720 MobiDBLite consensus disorder prediction 684 720 - -
Acco12g0413 720 CDD SF2_C_RecQ 294 430 - -
Acco12g0413 720 SMART helicmild6 340 421 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g0413 Acco-ChrAcco12 3582150 3591556 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g0413 98 435 Eukaryotic Initiation Factors Gene Family AT3G19760 20.397 1.40e-08 55.8