Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g0396 ATGGGATCCAGTAGTAGCAAAGCCACTTCCTCTTGCAATTCGTCGTCGTCTTCCGGCAGTTTCCGGAAGGTTCGATCTAAGAAAGGGCATAGAGGATTTCAGTCGTCTTGTCTGAGAACTAACTCTGGATCTCATGACGAACAGAATAAAGTAAATGGCAGTGGTGTAACACACAACTGTTGCACTGTGACACGGTCAAATGAGATGAAATCAAAGTCTTTTAGAGATGATAAAAAGAAAATATCTGATGACATGCCTTCCAACATTGACCTTAATGAGTGGGCTCAGACAAGCATCTCCCGTAATTCCTCCAGAACTCGTAGCCGATCTGCTCGTACTTCTTCAACTGGTAGTCGATTTCTTTCTCATTTTAGCTTTATTCCTGGTAATATAAGCTTCAGACTTGGCAGAACCACCAGTTTAGGGTCATCAAGGTCTTGCCATGTTTCTTCTACAACGATGTCAATATTCAACAATGAAGATGATCTTAGTCTGCATACAGGACCCACTGGCAGCTTGGTTAATAGAAATGAAACTCAACATTCATCAGATTCATCTGGCAACTTGCAGAGTAATCCCTCAGTTTCTTCTATACAGAATGTGGGTAGAGATGGAATTGGTTCTTGTGAAGGGCTGGATATAAACTTGTTTCCTCCAAGAATTCATGCCGAGACTGAAAATGTTGAGGTTCGACAAAATGGAGCTCGAGAACATGTTGAACGGAATTTTCGGTATAGCCGGACTCTAAGTGTTGGGAGGCTTCGTAATAGAGTTCTTCGTCAATCAACTTTATCTGATGTCAGCTTTTGCCCCCAGCAACAAGAGAGAGAAGCAAGGGATGCTAGGGAGGATAATGAAAGACAAGCCAGGGAGGGAGATTCAAGAGTATTACCATCTTTTAGTAATGCTACAAATTCTTCTTCTATTTCTGGTTATCCTCCATCCAGTATGTCTGGCTCCTTATTCAACATCCAAGACTATGAGGTTGAGAATTTGCGGCCAAGAGAAGCTAGGTACCATGATCTGTTGGAACACAGATCGAACTTCCTTGAGCGGAGAAGAAGAATAAGATCCCAGGTTCGTGCTCTTCAGCGGTTGGGTAGCCGGTTTGAAAATCTATCTGGACATGACAGATCTTGTATCCTGTCTGGTCAGCATAGAAATGGTCATTGTACATGCCGAATTGGCAGTCGTGATACTAGTTCAATTGATGATACCGGTACTAGAGCTAGCATATCAAGAATTGTAATGCTAGCCGAAGCTTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCTGCGGTTTTATCTTCTCGCCCTTCTGTGTCTTCCATTGGATCTGTTCCTGCACCTAATGATGTAGTGGAGTCTTTGCCGGTCAGATTATACACAAAGTTGCATAAACATCAGGAGGATGCTGCCCAATGCTATATATGCCTTGTGGAGTACGAGGATGGAGACAGCATGCGTGAGCTGCCTTGCTATCACCAATTTCATAGAACATGCATTGACAAGTGGCTCAAGGAAATTCACAGGGTATGTCCACTATGTCGGAGGGACATCTGCATATCTGATTCACTGTCAATGGAGAACTAA 1596 0.4305 MGSSSSKATSSCNSSSSSGSFRKVRSKKGHRGFQSSCLRTNSGSHDEQNKVNGSGVTHNCCTVTRSNEMKSKSFRDDKKKISDDMPSNIDLNEWAQTSISRNSSRTRSRSARTSSTGSRFLSHFSFIPGNISFRLGRTTSLGSSRSCHVSSTTMSIFNNEDDLSLHTGPTGSLVNRNETQHSSDSSGNLQSNPSVSSIQNVGRDGIGSCEGLDINLFPPRIHAETENVEVRQNGAREHVERNFRYSRTLSVGRLRNRVLRQSTLSDVSFCPQQQEREARDAREDNERQAREGDSRVLPSFSNATNSSSISGYPPSSMSGSLFNIQDYEVENLRPREARYHDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHDRSCILSGQHRNGHCTCRIGSRDTSSIDDTGTRASISRIVMLAEALFEVLDEIHQQSAVLSSRPSVSSIGSVPAPNDVVESLPVRLYTKLHKHQEDAAQCYICLVEYEDGDSMRELPCYHQFHRTCIDKWLKEIHRVCPLCRRDICISDSLSMEN 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g0396 531 MobiDBLite consensus disorder prediction 269 314 - -
Acco12g0396 531 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 439 523 IPR013083 -
Acco12g0396 531 MobiDBLite consensus disorder prediction 89 115 - -
Acco12g0396 531 MobiDBLite consensus disorder prediction 1 22 - -
Acco12g0396 531 Pfam Ring finger domain 475 518 IPR001841 -
Acco12g0396 531 MobiDBLite consensus disorder prediction 160 202 - -
Acco12g0396 531 SUPERFAMILY RING/U-box 454 524 - -
Acco12g0396 531 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 530 - -
Acco12g0396 531 MobiDBLite consensus disorder prediction 1 115 - -
Acco12g0396 531 MobiDBLite consensus disorder prediction 33 68 - -
Acco12g0396 531 SMART ring_2 476 517 IPR001841 -
Acco12g0396 531 MobiDBLite consensus disorder prediction 69 86 - -
Acco12g0396 531 MobiDBLite consensus disorder prediction 273 293 - -
Acco12g0396 531 ProSiteProfiles Zinc finger RING-type profile. 476 518 IPR001841 -
Acco12g0396 531 FunFam Putative RING zinc finger domain superfamily protein 445 523 - -
Acco12g0396 531 MobiDBLite consensus disorder prediction 295 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g0396 Acco-ChrAcco12 3471531 3476305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g0396 72 525 C3H Transcription Factor Family AT5G45290 49.576 1.89e-115 350