Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g0390 ATGTCATTAGTTTGTATTGCTTGTGTCAGTAATAATTTTTGTGGTTACAAAATCTATTATAGGAACTGCAATTTTGAAGTCGATTTCATAGTAGATATGGAAGATGATGATTATGTGGAGTATGTGCCTGTGGCCAAGCGTAGGGCCATGGAGACCCAGAAGATTCTTCAGCGAAAAGGAACGGCATCCTCCACAGTTGATGATGATTTGGAGAAATCAAGAGTGGCTGAAGCTAAACCAAGTCTTTTGGTTAAGGTGTCACAGTTGAAACGGGATCAACCTGAGATTAGTCCAACAGAGCAGATTGTTCAACAAGAAAAAGAGATGATTGAAAACTTATCAGATCGAAAAACTCTGATGTCTGTTCGGGAATTGGCTAAGGGAATCACCTATACAGACCCTTTGCCTACTGGATGGAAGCCACCTTTACCAATTAGAAGAATGTCAAAAAAAGCATGTGATTTGATTCGGAAGCAGTGGCATATAATAGTTGATGGTGAAGACATCCCACCCCCAATTAAGAATTTCAAGGACATGAGGCTTCCTGAGCCAATTTTGAAGAAGTTGAAAGAAAAAGGGATTGTTCAACCAACACCTATTCAAGTACAAGGCCTTCCTGTGATCTTATCCGGGAGGGATATGATTGGGATTGCATTCACAGGATCGGGGAAGACTCTAGTCTTTGTGTTGCCAATGATCATGGTGGCACTGCAAGAGGAAATTATGATGCCTATTGTTCCAGGAGAAGGTCCATTTGGGTTGATCATTTGCCCATCAAGGGAACTGGCTAGACAAACTTACGAAGTGGTTGAACAATTCTTGATACCTCTTAGAGACGCTGGATATCCTGAGCTCAGGCCATTGCTTTGTATTGGTGGGGTAGATATGAGATCACAGCTGGATATTGTTAAGAAGGGTGTCCACATTGTTGTTGCCACCCCTGGGAGGTTAAAGGATATGTTAGCAAAGAAAAAAATGAATCTTGATAATTGCAGGTATTTAACATTAGATGAGGCTGATAGATTGGTAGATTTGGGATTTGAAGATGACATTAGAGAAGTGTTTGATCACTTCAAAGCTCAAAGACAGACGCTCTTATTTTCTGCCACCATGCCAACCAAAATTCAGAATTTTGCTAGAAGTGCTCTAGTGAAACCAGTCATTGTCAATGTGGGGCGAGCAGGGGCAGCAAATCTTGACGTAATACAGGAGGTAGAGTATGTTAAGCAAGAGGCAAAAATTGTGTATCTCCTTGAGTGCCTGCAGAAAACCCCACCTCCAGTTTTAATATTCTGTGAGAACAAGGCAGATGTTGATGACATTCATGAATATCTTCTCTTGAAAGGAGTGGAAGCAGTGGCTATTCATGGAGGCAAAGATCAGGAAGACAGAGAGTATGCAATTTCTTCCTTTAAGTCCGGAAAGAAAGATGTGCTGGTTGCAACTGATGTTGCATCCAAGGGATTGGATTTTCCTGATATTCAGCATGTTATCAACTATGACATGCCTGCTGAAATTGAAAACTATGTTCATAGGATTGGACGAACTGGACGATGTGGCAAGACAGGCATAGCAACAACGTTCATTAACAAGAATCAAACCGAGACAACCTTGCTTGACTTGAAGCATCTGCTGCAAGAAGCAAAACAACGTATTCCCCCAGTTTTAGCAGAGCTGAATGATCCAATGGAATATACTGAGGAAATCACTGATAAAAGTGGGGTCAAGGGCTGTGCGTATTGTGGTGGGCTTGGTCATCGCATTCGTGACTGCCCCAAATTGGAACATCAGAAGAGCATGGCAATTGCAAACAACAGAAGGGATTATTTTGGTTCTGGTGGATACAGAGGAGAAATATGA 1860 0.4172 MSLVCIACVSNNFCGYKIYYRNCNFEVDFIVDMEDDDYVEYVPVAKRRAMETQKILQRKGTASSTVDDDLEKSRVAEAKPSLLVKVSQLKRDQPEISPTEQIVQQEKEMIENLSDRKTLMSVRELAKGITYTDPLPTGWKPPLPIRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRLPEPILKKLKEKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPMIMVALQEEIMMPIVPGEGPFGLIICPSRELARQTYEVVEQFLIPLRDAGYPELRPLLCIGGVDMRSQLDIVKKGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVIVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDREYAISSFKSGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQTETTLLDLKHLLQEAKQRIPPVLAELNDPMEYTEEITDKSGVKGCAYCGGLGHRIRDCPKLEHQKSMAIANNRRDYFGSGGYRGEI 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g0390 619 SMART c2hcfinal6 577 593 IPR001878 GO:0003676|GO:0008270
Acco12g0390 619 Pfam Zinc knuckle 577 593 IPR001878 GO:0003676|GO:0008270
Acco12g0390 619 CDD SF2_C_DEAD 401 529 - -
Acco12g0390 619 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 174 202 IPR014014 GO:0003724
Acco12g0390 619 FunFam Probable ATP-dependent RNA helicase DDX41 141 390 - -
Acco12g0390 619 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 250 535 IPR027417 -
Acco12g0390 619 Gene3D - 143 393 IPR027417 -
Acco12g0390 619 Pfam Helicase conserved C-terminal domain 413 520 IPR001650 -
Acco12g0390 619 SMART ultradead3 193 404 IPR014001 -
Acco12g0390 619 CDD DEADc_DDX41 185 390 IPR044113 GO:0000398|GO:0003724|GO:0005524
Acco12g0390 619 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 127 560 - -
Acco12g0390 619 FunFam Probable ATP-dependent RNA helicase DDX41 399 561 - -
Acco12g0390 619 ProSiteProfiles Zinc finger CCHC-type profile. 578 593 IPR001878 GO:0003676|GO:0008270
Acco12g0390 619 SUPERFAMILY Retrovirus zinc finger-like domains 577 598 IPR036875 GO:0003676|GO:0008270
Acco12g0390 619 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 400 560 IPR001650 -
Acco12g0390 619 Pfam DEAD/DEAH box helicase 198 377 IPR011545 GO:0003676|GO:0005524
Acco12g0390 619 SMART helicmild6 439 520 IPR001650 -
Acco12g0390 619 Coils Coil 531 551 - -
Acco12g0390 619 Gene3D - 399 561 IPR027417 -
Acco12g0390 619 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 205 389 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g0390 Acco-ChrAcco12 3420638 3422497 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g0390 146 555 Eukaryotic Initiation Factors Gene Family AT3G13920 30.024 1.11e-56 195