Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g0353 ATGACTCGTATTCTCAAATCCACGGACAACTCCACCTCCGCCGCCGCCGCGGCCACCATCACCGCTTTGGCGCCGCCTCCGGAGGCCGTCGCTTTGGAATCAGACTTCGTTGTCATCCTCGCGTCTCTGCTTTGCGCTCTCATATGCACCGTCGCCCTAATAGCCGTCTGTCGCTGCACCTGGTTCCGTCGCGGTGGATCCGGAGCTGGCGGCCGAGCTCCGGGGCAGTCTCTGGCGAATAAAGGTCTGAAGAAGAAGGTGCTTCAGTCCATGCCGAAATTCCCTTACACTGAGAGCAATCCCGACAGGTGGTTGGCCACGTCGGAGTGCGCGATTTGCTTGGCCGAATTCGCCGGAGCCGACGAGATCCGAGTTCTCCCGCAGTGTGGCCACGGCTTCCACGCGGCCTGCATAGACACCTGGCTCGGATCCCACTCCTCGTGCCCTTCGTGTCGTCAGATTCTTGCTATGCCTCCTAGGTGCCGCCGGTGCGGCCTTTACCCGGCGGTTCGCGGCGTAGGATCCACCGGAACTAGCGCGGGTGAACCGGAGCTCAAATCCAGACACGACGATAATGCCACTACTGCTAATAATAATGATCATGTGAATAGCTCCACTAGCGAACACCAACGGCCCAGGGATAATACTGGATTCCTTCCATAA 663 0.5913 MTRILKSTDNSTSAAAAATITALAPPPEAVALESDFVVILASLLCALICTVALIAVCRCTWFRRGGSGAGGRAPGQSLANKGLKKKVLQSMPKFPYTESNPDRWLATSECAICLAEFAGADEIRVLPQCGHGFHAACIDTWLGSHSSCPSCRQILAMPPRCRRCGLYPAVRGVGSTGTSAGEPELKSRHDDNATTANNNDHVNSSTSEHQRPRDNTGFLP 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g0353 220 Pfam Ring finger domain 109 152 IPR001841 -
Acco12g0353 220 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 28 165 - -
Acco12g0353 220 ProSiteProfiles Zinc finger RING-type profile. 110 152 IPR001841 -
Acco12g0353 220 FunFam E3 ubiquitin-protein ligase ATL6 72 158 - -
Acco12g0353 220 CDD RING-H2_EL5-like 109 152 - -
Acco12g0353 220 MobiDBLite consensus disorder prediction 196 213 - -
Acco12g0353 220 SMART ring_2 110 151 IPR001841 -
Acco12g0353 220 SUPERFAMILY RING/U-box 96 161 - -
Acco12g0353 220 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 157 IPR013083 -
Acco12g0353 220 MobiDBLite consensus disorder prediction 173 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g0353 Acco-ChrAcco12 3035111 3035773 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g0353 31 191 C3H Transcription Factor Family AT1G20823 56.213 6.92e-56 175