Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g0325 ATGAAGCGTGATTTCTACGAAATCTCCGACGATGAATGGGACAACCATTCCTTTAAGCCCTCTCGGGTTTTGAAGAAATCACAGACTTCTGCTCCTCCCCCGATTGAGTCCTTTGCTTTTCGGCCTGGTAAGCTTGAAAATTCTGACCAGAGTAGCGATGATTGCATCCAAGTGGAAGAAAGTTTGGAGGATGAGGATGTGGAGCCGGAGGGAGGTAAGTCTGGGGCAGTGGCAAATCGTGGCCGTCGGTTTGTTGTTGACGACGACGACGAGGAGAGCGATAGGGATGTTGCCGAAGTGTATGAAATAAAGTCAACTGACGAGGATGAAGTAGAAGAGGAGCTAGCGGATGAAATAGAAGAGGAGCAAGCGGATGAAGATGATGTGGTTGGGAGGGCTTTGTATAAGTGTGCAAAAATATCTGCAGAATTGAAAGGAGAGCTATATGGGTCGTCGGGGACTGCTTGCGATCGGTATTCTGAGGTGGAATCTTCTTCAGTGAGAATTGTGAATCAGGACGATATTGATGTGGCATGCGGGTCTGAGGATTCTGATTTCCAGCCTATCCTCAAGCCATATCAGCTGGTTGGTGTCAACTTTTTGCTCTTGTTGTATCGGAAGGGCATTGGAGGAGCCATATTGGCAGATGAAATGGGTCTTGGGAAAACAATTCAGGCCATCACATATCTTACCTTGTTGAAACACCTGCACAATAATCCTGGTCCACATCTTATCGTATGCCCAGCTTCTGTTTTGGAAAATTGGGAAAGGGAGCTGCAAAGGTGGTGTCCATCCTTTTCTGTTCTACAATACCATGGCTCTGGACGAGCAACATACTTCAAGGAGTTAAGCTATTTGTCTAAGGCGGGATTACCTCCTCCATTTAATGTTCTTCTTGTGTGTTATTCACTTTTTGAACGGCACAGTGCACAGCAGAAAGATGATCGCAAAATTCTGAAGCGTTGGAAGTGGAGCTGTGTTTTGATGGATGAGGCACATGCTTTGAAGGACAAAAATAGCTATAGGTGGAAGAATCTAATGTCTGTTGCACGCAATGCAAACCAGCGTTTGATGCTGACAGGGACACCCCTTCAAAATGATCTACATGAATTATGGTCGCTGTTGGAGTTTATGATGCCAGATATTTTTGCTACTGAAGATGTTGACTTGAAAAAATTACTGAACACAGAAGACAGAGATTTAGTTGGTCGCATGAAGTCCATCTTGGGGCCATTTATTTTACGGAGGCTAAAATCTGATGTGATGCAGCAACTTGTTCCTAAAATTCAACGAGTTGAATATGTTGTAATGGAAGTGCAGCAGGAAAATGCTTATAAGGAAGCCATTGAGGAGTATCGTGCTATTTCACAAACTCGAATGGCAAAATGTTCAGGACCTAATTCTAATAATATTCTTCAAGTTCTTCCTCGTCGACAAATTAACAATTATTTTGTTCAGTTTCGCAAGATTGCAAACCATCCCTTGTTGATTAGGCAAATCTATAGTGATGAGGATGTCATTCGCTTTGCTAGGAAGTTACATCCCGTGGGTGCTTTTGGCTTTGAATGTACTTTGGACAGAGTAATTGACGAACTAAAAAGTTACAATGACTTCTCAATTCACCGGCTTTTGCTTCATTATGGTGTCAATGATAGAAAGGGTGTCCTTCCAGATAGAAGTGTTATGTCTTCTGCAAAATGTCGGGCCTTAAAAAAGCTTCTTCCTTCACTTCAGAAAGGTGGTCATCGTGTATTAATATTTAGTCAGTGGACGTCTATGCTTGATATTTTGGAGTGGACACTTGATGTCATTGGTTTGACCTACAGACGGCTTGATGGAAGTACACAGGTAACAGAGAGGCAAACAATAGTTGATACATTCAATAACGATGCTTCCATATTTGCTTGCTTGCTTTCTACAAGAGCTGGAGGACAAGGCTTGAACTTGACAGGAGCTGATACTGTTGTAATTCATGACATGGATTTCAATCCACAGATTGATAGACAGGCAGAAGATCGTTGTCATAGGATAGGTCAAACAAGGCCTGTAACTATATATCGGCTGGTTACCAAGGGTACAGTTGACGAAAATGTATATGAGATTGCAAAAAGAAAGCTTGTATTGGATGCTGCGGTCCTTGAATCTGGCATGGAGATGGATGATAAAGGTGACATGCCTGAGAAGACCATGGGAGAGATATTATCTGCAATTTTGCTGGGTTAA 2223 0.4269 MKRDFYEISDDEWDNHSFKPSRVLKKSQTSAPPPIESFAFRPGKLENSDQSSDDCIQVEESLEDEDVEPEGGKSGAVANRGRRFVVDDDDEESDRDVAEVYEIKSTDEDEVEEELADEIEEEQADEDDVVGRALYKCAKISAELKGELYGSSGTACDRYSEVESSSVRIVNQDDIDVACGSEDSDFQPILKPYQLVGVNFLLLLYRKGIGGAILADEMGLGKTIQAITYLTLLKHLHNNPGPHLIVCPASVLENWERELQRWCPSFSVLQYHGSGRATYFKELSYLSKAGLPPPFNVLLVCYSLFERHSAQQKDDRKILKRWKWSCVLMDEAHALKDKNSYRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDIFATEDVDLKKLLNTEDRDLVGRMKSILGPFILRRLKSDVMQQLVPKIQRVEYVVMEVQQENAYKEAIEEYRAISQTRMAKCSGPNSNNILQVLPRRQINNYFVQFRKIANHPLLIRQIYSDEDVIRFARKLHPVGAFGFECTLDRVIDELKSYNDFSIHRLLLHYGVNDRKGVLPDRSVMSSAKCRALKKLLPSLQKGGHRVLIFSQWTSMLDILEWTLDVIGLTYRRLDGSTQVTERQTIVDTFNNDASIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTRPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLESGMEMDDKGDMPEKTMGEILSAILLG 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g0325 740 CDD SF2_C_SNF 556 689 - -
Acco12g0325 740 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 569 731 IPR001650 -
Acco12g0325 740 CDD DEXHc_Snf 190 383 - -
Acco12g0325 740 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 416 IPR027417 -
Acco12g0325 740 Gene3D - 551 735 IPR027417 -
Acco12g0325 740 SMART ultradead3 186 391 IPR014001 -
Acco12g0325 740 Gene3D - 172 440 IPR038718 -
Acco12g0325 740 SMART helicmild6 595 678 IPR001650 -
Acco12g0325 740 MobiDBLite consensus disorder prediction 22 94 - -
Acco12g0325 740 Pfam Helicase conserved C-terminal domain 566 678 IPR001650 -
Acco12g0325 740 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 203 381 IPR014001 -
Acco12g0325 740 FunFam Protein CHROMATIN REMODELING 19 isoform A 161 439 - -
Acco12g0325 740 PANTHER SNF2/RAD54 HELICASE FAMILY 76 718 - -
Acco12g0325 740 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 322 719 IPR027417 -
Acco12g0325 740 Pfam SNF2-related domain 210 496 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g0325 Acco-ChrAcco12 2828733 2835494 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g0325 211 705 RAD5 or RAD16-like Gene Family AT5G22750 26.461 6.68e-46 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Acco12g0325 SNF2_N 4.2e-54 CL0023