Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g0310 ATGTCTTGCTCGTCGTCATCGGGGTCCGAGGAAGAGGATGAGGGCTTCGATTCCTACAGAAAAGGAGGCTACCACGCCGTCAGGGTCGGCGATCAGTTCGCCGGTGGGAGGTACATAGCTCAGAGGAAGCTTGGGTGGGGTCAGTTTTCCACCGTCTGGCTCGCTTACGATACTCACAATTCTACATATGTTGCCCTCAAAATTCAGAAAAGTGCAGCCCAGTTTGCTGAGTCTGCCCTTCATGAGATAAATGTTCTTTCTTCCATTGCTGAGGCTGACCCTTCAAATTCAAAGTGTGTCGTTCAATTGATCGACCACTTTAAGCACTCAGGCCCAAATGGGCAGCACCATTGCATGGTCCTTGAATTCCTTGGTGATAGCTTGCTTCGCCTGATCAGATACAGACGTTATAAAGGCCTCCCAATGAATAAAGTTAGGGAAATTTGCAAATGCATTTTGATTGGTCTGGATTACTTGCATAGAGAACTTGGTATAATCCACTCAGACCTAAAACCTGAAAATGTCCTTCTCTTATCCACCATTGATCCTGCTAAAGACCCTGTTAGATCAGGACAAAGCCCAATTCTGGAGAAGCCTGAGGGAGGCAATGTTGGATTCTCAAGAGTTGTTGAGAAAAAGTTGAAAAGGAGAGCGAGAAGAGCAGTTGCTAAAATATCAGGAAGAAATTCTCCATTGGTAGAAGCTGTAGGGGTTCCAAAGTTTGATAGAAATGTTGATGGAATTGATGTGCAATGCAAGATAGTAGATTTTGGAAATGCATGCTGGGCAGATAAGCCATTGGCAGTAGAAATCCAGACGAGGCAGTATAGAGCTCCTGAAGTTATACTGCAGACTGGGTATTCCTTCTTTGTTGACATGTGGTCTTTTGCTTGCATCGCTTTTGAGCTGGCCACAGGTGATATGATGTTTACTCCCAAGCCAGGACAAGGTTTTAGTGAGGATGAGGACCACCTTGCCTTGATGATGGAACTCCTTGGAAAGATGCCCCGGAAGGTTGTCGTTAGTGGAGCAAAATCCAAGGATTTCTTTGACAGGCATGGGGATCTAAAAAGAATTAGGAGGCTAAAATTCTGGCCACTTCACAAATTTTTGATCGATAAATACAATTTTTCAGCGAGTGATGCTCGTGAGTTTTCAGGTTTTCTTTTGCCCCTTCTGGATTTTTCACCGGAGAAGCGGCCAACTGCACAACAGTGCTTAGAACACCCATGGCTTACTGGTTAA 1245 0.4506 MSCSSSSGSEEEDEGFDSYRKGGYHAVRVGDQFAGGRYIAQRKLGWGQFSTVWLAYDTHNSTYVALKIQKSAAQFAESALHEINVLSSIAEADPSNSKCVVQLIDHFKHSGPNGQHHCMVLEFLGDSLLRLIRYRRYKGLPMNKVREICKCILIGLDYLHRELGIIHSDLKPENVLLLSTIDPAKDPVRSGQSPILEKPEGGNVGFSRVVEKKLKRRARRAVAKISGRNSPLVEAVGVPKFDRNVDGIDVQCKIVDFGNACWADKPLAVEIQTRQYRAPEVILQTGYSFFVDMWSFACIAFELATGDMMFTPKPGQGFSEDEDHLALMMELLGKMPRKVVVSGAKSKDFFDRHGDLKRIRRLKFWPLHKFLIDKYNFSASDAREFSGFLLPLLDFSPEKRPTAQQCLEHPWLTG 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g0310 414 SMART serkin_6 38 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco12g0310 414 FunFam Protein kinase superfamily protein 24 123 - -
Acco12g0310 414 ProSiteProfiles Protein kinase domain profile. 38 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco12g0310 414 Gene3D Transferase(Phosphotransferase) domain 1 92 412 - -
Acco12g0310 414 SUPERFAMILY Protein kinase-like (PK-like) 32 413 IPR011009 -
Acco12g0310 414 FunFam Serine/threonine-protein kinase SRPK 115 412 - -
Acco12g0310 414 Gene3D Phosphorylase Kinase; domain 1 24 123 - -
Acco12g0310 414 CDD STKc_SRPK 27 412 - -
Acco12g0310 414 ProSitePatterns Protein kinases ATP-binding region signature. 44 67 IPR017441 GO:0005524
Acco12g0310 414 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Acco12g0310 414 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 8 205 - -
Acco12g0310 414 Pfam Protein kinase domain 250 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco12g0310 414 Pfam Protein kinase domain 39 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g0310 Acco-ChrAcco12 2689780 2693077 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g0310 4 413 EF-hand Containing Proteins AT5G22840 50.542 4.18e-165 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Acco12g0310 Pkinase 5.4e-21 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco11g2470 11 37766810 37770188 Acco12g0310 12 2689780 2693077 CCT