Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g0304 ATGGCCAAAAAGGCCGACGCCACAGTCGACAATAACCGGTTGAAGCGCAAGGGCGCTGGAGTTGGAAGGAAGCGACGAAAGGCTGCAAAGGATCCAAACAAGCCAAAGAGGCCTCCGAGCGCTTTCTTTGTGTTTATGTCTGAGTTTAGAGAGCAGTATAAGAAGGAACATCCAGACAATAAATCAGTCACTGCTGTTGGTAAAGCCGGCGGTGATGAATGGAGGACCATGTCTGATGCTGATAAAGCTCCCTACGCTGAACAGGCAGAGAAGAAGAAGGCGGAATATGAGAAAACTATTAAAGCGTACAATATGAGATTGGCTGAGGGCTTAAATTCAGAGGAAGCTGAGTCCGATAAATCAAAGTCGGAAGTCAATGACGATAAAAATGATGATAACGAAGAGGTACGTAGTGACATGCAAAAAGCAGAGTCCATTAGTTTAGTTCTGCATCATGATCCTGCGAATGGGGATAGACTAGTTAACCAAGGCAAGATAACAGTTACAGTGCTGCTGATCAAGAGAGAATCAGAAAATACAGCCCTGCTGCTTGTCGGAGACGTTTTGGCAGAACACCGCTGCATTGCAATTAACGATTGCATGAGGTATTTCTCTCTATTTTTTCTTCTTGGCGTCGAAGATATATATATCGAATTTCTTTGTTTGAGAATGACCAAATTTTCAATCAGCAATACCAATTATACTTACGTGCACGACCATAATGATCCTTCTGAAGCAATTGACGTACACCATATAATGGTGAAAAGGAGTGGCGTAAAAGCTCGCTTTGTTTACATCTCAGCATTTGTTCTCTTAGCTTCTTCCTTCTATCTCTACGCGTATGAGGGGAAGTCAATTACCCTTGTCTATTACAGCTTGCTTTTCAACTTAATACTTGTCAAGATCTTACTTTGGAGGCCTGTTGCGAAAGAGTCTGTTGTGATAATGCCGTCTTTTGGAGTACAGCTTGAGACTCACTACATGAGTGGAAAAGTCACCCGCCACTTTGTTCCCATTGAGAAGATTCTGAAGCCTGTTTTACTAGAACGTGTGACACCAATGACTTGTTACTGGACTCTATCCTTGATTATTCGTGAGGAATCAGAACTAATGTTGATTTTTAAGAACTTACGTCCACCAGTTAAAATATTGGTACATGTGTGGAAGGCCCTGTGTGCTGGAACCGATAGCAAAAGAGACTTGGACAAAAGCACTGTTGAGAATTAA 1227 0.4238 MAKKADATVDNNRLKRKGAGVGRKRRKAAKDPNKPKRPPSAFFVFMSEFREQYKKEHPDNKSVTAVGKAGGDEWRTMSDADKAPYAEQAEKKKAEYEKTIKAYNMRLAEGLNSEEAESDKSKSEVNDDKNDDNEEVRSDMQKAESISLVLHHDPANGDRLVNQGKITVTVLLIKRESENTALLLVGDVLAEHRCIAINDCMRYFSLFFLLGVEDIYIEFLCLRMTKFSISNTNYTYVHDHNDPSEAIDVHHIMVKRSGVKARFVYISAFVLLASSFYLYAYEGKSITLVYYSLLFNLILVKILLWRPVAKESVVIMPSFGVQLETHYMSGKVTRHFVPIEKILKPVLLERVTPMTCYWTLSLIIREESELMLIFKNLRPPVKILVHVWKALCAGTDSKRDLDKSTVEN 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g0304 408 MobiDBLite consensus disorder prediction 1 17 - -
Acco12g0304 408 SMART hmgende2 34 105 IPR009071 -
Acco12g0304 408 Gene3D High mobility group box domain 21 103 IPR036910 -
Acco12g0304 408 MobiDBLite consensus disorder prediction 18 32 - -
Acco12g0304 408 MobiDBLite consensus disorder prediction 1 41 - -
Acco12g0304 408 Pfam HMG (high mobility group) box 35 104 IPR009071 -
Acco12g0304 408 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 35 104 IPR009071 -
Acco12g0304 408 MobiDBLite consensus disorder prediction 74 92 - -
Acco12g0304 408 MobiDBLite consensus disorder prediction 110 138 - -
Acco12g0304 408 CDD HMG-box_AtHMGB1-like 36 96 - -
Acco12g0304 408 Coils Coil 86 106 - -
Acco12g0304 408 MobiDBLite consensus disorder prediction 53 92 - -
Acco12g0304 408 Pfam GPI-GlcNAc transferase complex, PIG-H component 312 375 IPR019328 -
Acco12g0304 408 Coils Coil 126 146 - -
Acco12g0304 408 MobiDBLite consensus disorder prediction 112 138 - -
Acco12g0304 408 PANTHER PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT H 225 398 IPR044215 GO:0000506|GO:0006506
Acco12g0304 408 SUPERFAMILY HMG-box 21 106 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g0304 Acco-ChrAcco12 2647035 2653328 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Acco12g0304 HMG_box 7.8e-23 CL0114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco12g0304 12 2647035 2653328 Acco12g0304 12 2647035 2653328 ECH