Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Acco12g0304 | ATGGCCAAAAAGGCCGACGCCACAGTCGACAATAACCGGTTGAAGCGCAAGGGCGCTGGAGTTGGAAGGAAGCGACGAAAGGCTGCAAAGGATCCAAACAAGCCAAAGAGGCCTCCGAGCGCTTTCTTTGTGTTTATGTCTGAGTTTAGAGAGCAGTATAAGAAGGAACATCCAGACAATAAATCAGTCACTGCTGTTGGTAAAGCCGGCGGTGATGAATGGAGGACCATGTCTGATGCTGATAAAGCTCCCTACGCTGAACAGGCAGAGAAGAAGAAGGCGGAATATGAGAAAACTATTAAAGCGTACAATATGAGATTGGCTGAGGGCTTAAATTCAGAGGAAGCTGAGTCCGATAAATCAAAGTCGGAAGTCAATGACGATAAAAATGATGATAACGAAGAGGTACGTAGTGACATGCAAAAAGCAGAGTCCATTAGTTTAGTTCTGCATCATGATCCTGCGAATGGGGATAGACTAGTTAACCAAGGCAAGATAACAGTTACAGTGCTGCTGATCAAGAGAGAATCAGAAAATACAGCCCTGCTGCTTGTCGGAGACGTTTTGGCAGAACACCGCTGCATTGCAATTAACGATTGCATGAGGTATTTCTCTCTATTTTTTCTTCTTGGCGTCGAAGATATATATATCGAATTTCTTTGTTTGAGAATGACCAAATTTTCAATCAGCAATACCAATTATACTTACGTGCACGACCATAATGATCCTTCTGAAGCAATTGACGTACACCATATAATGGTGAAAAGGAGTGGCGTAAAAGCTCGCTTTGTTTACATCTCAGCATTTGTTCTCTTAGCTTCTTCCTTCTATCTCTACGCGTATGAGGGGAAGTCAATTACCCTTGTCTATTACAGCTTGCTTTTCAACTTAATACTTGTCAAGATCTTACTTTGGAGGCCTGTTGCGAAAGAGTCTGTTGTGATAATGCCGTCTTTTGGAGTACAGCTTGAGACTCACTACATGAGTGGAAAAGTCACCCGCCACTTTGTTCCCATTGAGAAGATTCTGAAGCCTGTTTTACTAGAACGTGTGACACCAATGACTTGTTACTGGACTCTATCCTTGATTATTCGTGAGGAATCAGAACTAATGTTGATTTTTAAGAACTTACGTCCACCAGTTAAAATATTGGTACATGTGTGGAAGGCCCTGTGTGCTGGAACCGATAGCAAAAGAGACTTGGACAAAAGCACTGTTGAGAATTAA | 1227 | 0.4238 | MAKKADATVDNNRLKRKGAGVGRKRRKAAKDPNKPKRPPSAFFVFMSEFREQYKKEHPDNKSVTAVGKAGGDEWRTMSDADKAPYAEQAEKKKAEYEKTIKAYNMRLAEGLNSEEAESDKSKSEVNDDKNDDNEEVRSDMQKAESISLVLHHDPANGDRLVNQGKITVTVLLIKRESENTALLLVGDVLAEHRCIAINDCMRYFSLFFLLGVEDIYIEFLCLRMTKFSISNTNYTYVHDHNDPSEAIDVHHIMVKRSGVKARFVYISAFVLLASSFYLYAYEGKSITLVYYSLLFNLILVKILLWRPVAKESVVIMPSFGVQLETHYMSGKVTRHFVPIEKILKPVLLERVTPMTCYWTLSLIIREESELMLIFKNLRPPVKILVHVWKALCAGTDSKRDLDKSTVEN | 408 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Acco12g0304 | 408 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
Acco12g0304 | 408 | SMART | hmgende2 | 34 | 105 | IPR009071 | - | |
Acco12g0304 | 408 | Gene3D | High mobility group box domain | 21 | 103 | IPR036910 | - | |
Acco12g0304 | 408 | MobiDBLite | consensus disorder prediction | 18 | 32 | - | - | |
Acco12g0304 | 408 | MobiDBLite | consensus disorder prediction | 1 | 41 | - | - | |
Acco12g0304 | 408 | Pfam | HMG (high mobility group) box | 35 | 104 | IPR009071 | - | |
Acco12g0304 | 408 | ProSiteProfiles | HMG boxes A and B DNA-binding domains profile. | 35 | 104 | IPR009071 | - | |
Acco12g0304 | 408 | MobiDBLite | consensus disorder prediction | 74 | 92 | - | - | |
Acco12g0304 | 408 | MobiDBLite | consensus disorder prediction | 110 | 138 | - | - | |
Acco12g0304 | 408 | CDD | HMG-box_AtHMGB1-like | 36 | 96 | - | - | |
Acco12g0304 | 408 | Coils | Coil | 86 | 106 | - | - | |
Acco12g0304 | 408 | MobiDBLite | consensus disorder prediction | 53 | 92 | - | - | |
Acco12g0304 | 408 | Pfam | GPI-GlcNAc transferase complex, PIG-H component | 312 | 375 | IPR019328 | - | |
Acco12g0304 | 408 | Coils | Coil | 126 | 146 | - | - | |
Acco12g0304 | 408 | MobiDBLite | consensus disorder prediction | 112 | 138 | - | - | |
Acco12g0304 | 408 | PANTHER | PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT H | 225 | 398 | IPR044215 | GO:0000506|GO:0006506 | |
Acco12g0304 | 408 | SUPERFAMILY | HMG-box | 21 | 106 | IPR036910 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Acco12g0304 | Acco-ChrAcco12 | 2647035 | 2653328 | Dispersed/Transposed |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | HMG | Acco12g0304 | HMG_box | 7.8e-23 | CL0114 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Acco12g0304 | 12 | 2647035 | 2653328 | Acco12g0304 | 12 | 2647035 | 2653328 | ECH |