Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g0275 ATGATGGCAGAAAGCAAAGACAAGCAGGCTCTTATTCTTAGACGAACCAGAGAGGACGATATCTCGGGGCTTCCAGTTCATCAGAGAGGAGACTTAGTGAGCAGCTTAGTGTACGAAGCAAATGCTAGGTTGCAAGACCCAGTGAATGGCTGTTTTGGGGAAATATCGCTTCTGCAGAATCAAGTTTCAGAGCTTCAAATGCAGCTCGCTGTGGCTCAGGCACAGGAACTTTACCCGAATCGTATGAGGCTTACATTAGACCTCAACCAACCTCCTTCTGGTGAAGATTAA 291 0.4674 MMAESKDKQALILRRTREDDISGLPVHQRGDLVSSLVYEANARLQDPVNGCFGEISLLQNQVSELQMQLAVAQAQELYPNRMRLTLDLNQPPSGED 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g0275 96 ProSiteProfiles LOB domain profile. 1 76 IPR004883 -
Acco12g0275 96 Pfam Lateral organ boundaries (LOB) domain 22 73 IPR004883 -
Acco12g0275 96 Coils Coil 55 75 - -
Acco12g0275 96 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 23 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g0275 Acco-ChrAcco12 2421948 2422715 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g0275 24 77 AS2 family AT2G30130 75.926 1.83e-22 84.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Acco12g0275 LOB 9.1e-14 No_clan