Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g0248 ATGGCTGTTACACCTACAAGCACTTCCAGCTTGGAATTGACCATTTCTGTCCCTGGTTTTGCTTCTTCTCCTCCTCTTCCTTCATCTGCAGTGAGAGAGCTAGACATAAACCAAGTACCGTCAACAGAAGAGGAATGGATAACAATGGAGGAAGAAGAAGAAAGCAGCAATGGAGGAGGAGGTCCTCCTCGTAAGAAACTCCGTCTTACCAAGGAACAGTCTCGTCTACTCGAGGACAGCTTCAGACAAAACCACACTCTCAACCCAAAGCAGAAAGAATCATTGGCAAAGCAGTTGAACCTGCGTGCCAGGCAGGTGGAAGTGTGGTTTCAGAACCGTAGGGCCAGGAGCAAGCTGAAGCAGACAGAGATGGAGTGCGAGTACCTGAAGAGATGGTTCGGATTGCTAACTGAACAGAACAGAAGGCTGCACAGGGAAGTGGAGGAGCTCAGGGCCATGAAGGTAGGGCCCCCCACCGTGATCACCCCCCACAGTTGCCACCCACTTCCGGCGTCAACCCTAACCATGTGTCCTCGCTGCGAGAAGGTCACCACCAACACCGACAAGGGCTCCACCCTGTCTTCTTCCCTTCTATAA 597 0.5193 MAVTPTSTSSLELTISVPGFASSPPLPSSAVRELDINQVPSTEEEWITMEEEEESSNGGGGPPRKKLRLTKEQSRLLEDSFRQNHTLNPKQKESLAKQLNLRARQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNRRLHREVEELRAMKVGPPTVITPHSCHPLPASTLTMCPRCEKVTTNTDKGSTLSSSLL 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g0248 198 SUPERFAMILY Homeodomain-like 52 121 IPR009057 -
Acco12g0248 198 Gene3D - 56 126 - -
Acco12g0248 198 MobiDBLite consensus disorder prediction 1 66 - -
Acco12g0248 198 SMART HOX_1 62 124 IPR001356 GO:0003677
Acco12g0248 198 CDD homeodomain 63 121 IPR001356 GO:0003677
Acco12g0248 198 FunFam Homeobox-leucine zipper protein 18 48 125 - -
Acco12g0248 198 Pfam Homeodomain 64 118 IPR001356 GO:0003677
Acco12g0248 198 SMART halz 120 163 IPR003106 GO:0006355|GO:0043565
Acco12g0248 198 ProSitePatterns 'Homeobox' domain signature. 95 118 IPR017970 GO:0000981|GO:0006355
Acco12g0248 198 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 40 192 - -
Acco12g0248 198 ProSiteProfiles 'Homeobox' domain profile. 60 120 IPR001356 GO:0003677
Acco12g0248 198 MobiDBLite consensus disorder prediction 1 23 - -
Acco12g0248 198 Pfam Homeobox associated leucine zipper 120 154 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g0248 Acco-ChrAcco12 2179283 2182478 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g0248 31 191 Homeobox Transcription Factor Family AT1G70920 63.253 7.92e-61 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Acco12g0248 Homeodomain 3.9e-17 CL0123