LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco12g0192	ATGACCAAATCTCACAGTTTTCTTCATAACCTGATTAAACCCTTCAAATTCGGTTCTAGTAAAGAGGGAAGCAGCGAACAAGAGTTAGAGAGAATTGCTGCCCAGGAGCAAAAAATCTTTCCCTATGAAACCTTACTTGCTGCTACCAAAAATTTTCATTCTCATCATAAGCTTGGTGAGGGAGGGTTTGGACCCGTCTACAAGGGGACGTTGGACGATGGAAGAGAGATTGCGGTAAAGAAGTTATCACAAAGTTCAAATCAAGGGAACAAAGAGTTCATGAACGAGGCCAAGTTGTTGGCTCGTGTGCAGCACCGGAATGTGGTGAATTTGTTGGGTTATTGTGTCCATGGCACAGAGAAGCTACTTGTGTATGAGTATGTTCCTCATGAGAGCCTTGATAAACTTTTATTCAAATCTCACAGAAGAGAGCAGCTAGATTGGAAAAGAAGGCTTGACATAATCACAGGCATAGCAAGGGGCTTACTTTATCTTCATGAAGACTCACATAGCTGCATCATCCACCGAGACATCAAGGCCAGTAACATCTTGCTTGATGACAAATGGATGCCTAAGATTGCAGACTTTGGCATGGCTCGTCTCTTTCCAGAGGACCAAACTCATGTCAATACACGGGTGGCTGGCACCAATGGATATATGGCTCCAGAGTATGTGATGCATGGACATTTATCAGTGAAGGCAGACGTGTATAGCTATGGTGTTTTGGTGCTGGAATTGATAAGTGGCCAAAGGAATTCAACGTTTAGCCTCGAGATGGATGCACATAATCTCCTTGATTGGTCATACAAGCTTTACAAGAAAGGGAGGAGCATAGAAATGGTTGACCCTGCATTAGCAGCTTCAGCAGTAGAAGATCAAGTAACAATGTGCATACAGCTGGGTCTGCTGTGTGTTCAAGGGGATCCGCAGCTCCGGCCAAGCATGCGTCGGGTGGTGGTGATGCTGTCGAAGAAGCCGGGTCACATGGACGAGCCGACTAGGCCAGGAGCTCCTGGTTCCAGATACAGAAGATCTCGCAGGCCATCTCCATTTTCCACCGCAGCTGGTACTTCTGGTGCTGACTCTGATTCTAGGACTTCAGACTCAAGCAGTAACTATACCGCCACCACAACAACGCCCGGAACAAGCTCCGCGGCTCGAGAAATTGTCAGTCGGGGAAAACGTCCCATGCATGAGGCTTAG	1203	0.468	MTKSHSFLHNLIKPFKFGSSKEGSSEQELERIAAQEQKIFPYETLLAATKNFHSHHKLGEGGFGPVYKGTLDDGREIAVKKLSQSSNQGNKEFMNEAKLLARVQHRNVVNLLGYCVHGTEKLLVYEYVPHESLDKLLFKSHRREQLDWKRRLDIITGIARGLLYLHEDSHSCIIHRDIKASNILLDDKWMPKIADFGMARLFPEDQTHVNTRVAGTNGYMAPEYVMHGHLSVKADVYSYGVLVLELISGQRNSTFSLEMDAHNLLDWSYKLYKKGRSIEMVDPALAASAVEDQVTMCIQLGLLCVQGDPQLRPSMRRVVVMLSKKPGHMDEPTRPGAPGSRYRRSRRPSPFSTAAGTSGADSDSRTSDSSSNYTATTTTPGTSSAAREIVSRGKRPMHEA	400

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco12g0192	400	MobiDBLite	consensus disorder prediction	346	386	-	-
	Acco12g0192	400	ProSiteProfiles	Protein kinase domain profile.	52	331	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco12g0192	400	FunFam	Cysteine-rich receptor-like protein kinase 10	16	127	-	-
	Acco12g0192	400	Pfam	Protein tyrosine and serine/threonine kinase	54	321	IPR001245	GO:0004672\|GO:0006468
	Acco12g0192	400	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	26	375	-	-
	Acco12g0192	400	SUPERFAMILY	Protein kinase-like (PK-like)	37	334	IPR011009	-
	Acco12g0192	400	CDD	STKc_IRAK	58	324	-	-
	Acco12g0192	400	Gene3D	Phosphorylase Kinase; domain 1	16	127	-	-
	Acco12g0192	400	FunFam	Cysteine-rich receptor-like protein kinase 10	129	334	-	-
	Acco12g0192	400	Gene3D	Transferase(Phosphotransferase) domain 1	128	332	-	-
	Acco12g0192	400	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	173	185	IPR008271	GO:0004672\|GO:0006468
	Acco12g0192	400	SMART	serkin_6	52	322	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco12g0192	400	MobiDBLite	consensus disorder prediction	322	400	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco12g0192	Acco-ChrAcco12	1661491	1665437	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco12g0192	42	338	Receptor kinase-like Gene Family	AT4G23230	51.678	1.17e-110	336

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Acco12g0192		PK_Tyr_Ser-Thr	8.1e-52	CL0016