Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g0171 ATGGGTGACATGAAGGATAAGTTAAAGGGTTTCATGAAGAAAGTCTCTCAATCACCCTCCGGAAAATTCAAGGGTCAAGGAAGAGTTCTTGGATCATCCTCTACCCAATCTTCATCTTCTGCATCCGCTAGTTCTAGTCTTCTCCGTCCTACGCAGAATTCGGGTCCAAAACCAAGTTCTGCATCGGCGAGCTCTCGACCCCTGCCCCAGAAAACTATCGATTCGGAGTCGAATGGGAAGGAAGGTTCGAGTAAGTCTAATCCTGATCGCAGACCGGTGAACGGGTTTGACCCTTATGATTCATTGATAACTACTGGGAAGAGATCTAAAAATGACTATTCTTTGAATGTGTATGAATGTCCCATTTGTGGGCGATCGTTTAGGTCCGAGGAAGATGTGTCTATACATGTGGATACCTGTCAGGATGGACCAGTTGAGCGTGATGACGGAGATGGTGTTTCACAATTACCTGACAATGGAGTTCAGTTAAATGGTGAATTGGAGGCTTGCATCAGTATGTATATGTCAGGGCAGCCATCTGAGGGTTCGGTCGAAGTTGTTCTGAAACTGCTGAGGAATATTATGAAGGAACCAGATAACGCAAAGTATAGGAAAATTAGGTTGACTAATCCAAAGATAAAAGAGGCTCTTAGTGAGGTTGCAGGAGGAATTGAGCTTCTGAGCTTTGTAGGATTTGACCTAAAGGATGAGGATGGAGAGAGCTGGGCAGTGATGGAAGTTCCTACTGAAGAGCAAATAAAATTGATTCAGAAAGCAATAACATTATTGGAATCACCAGTACTACAAGAACCTGTAAAGATAGACAATAGGGCATCTGAAACATGTGTTGAGATGGATGACGAGGCAGAACCTAAAAAGGTGGACAGACAGGTAAAGGTATTCTTCGCTGTGCCAGAAAGCATTGCATCAAAGATTGAGCTACCAGATTCTTTCTATAACCTTTCAATTGACGAGGTGAAAAGGGAAGCTGAATTAAGGAGGAAAAAGATGGCAGATTCTCAGCTTTTAATCCCCAAGTCACTTAAAGAAAAGCAAGCAAAAGCTGCTAGGAGGAGATACAGAAAAGCTATGATTCGGATCCAGTTTCCAGATGGAGTGATACTTCAAGGTGTATTTAATCCATGGGAACCGACAACTGCATTGTATGAGTTTGCCGGCTCCGCATTGAAAGAACCATGTTTGGAATTTGACCTCATGCATCCCGCACTTGTTCGACGAAGGGTTATCCCTCATTTCCCAAGCGCAGGAGAGAAAGCTTTTACATTAGAGGATGAGGACCTGGTGCCTTCAGCTCTCATCAAGTTGAAACCTCATGAAACGGATCATGTTGTTTACACTGGCCTCAGAAATGAATTGCTTGAAATCAGTGAACCCCTCTCATAA 1404 0.4345 MGDMKDKLKGFMKKVSQSPSGKFKGQGRVLGSSSTQSSSSASASSSLLRPTQNSGPKPSSASASSRPLPQKTIDSESNGKEGSSKSNPDRRPVNGFDPYDSLITTGKRSKNDYSLNVYECPICGRSFRSEEDVSIHVDTCQDGPVERDDGDGVSQLPDNGVQLNGELEACISMYMSGQPSEGSVEVVLKLLRNIMKEPDNAKYRKIRLTNPKIKEALSEVAGGIELLSFVGFDLKDEDGESWAVMEVPTEEQIKLIQKAITLLESPVLQEPVKIDNRASETCVEMDDEAEPKKVDRQVKVFFAVPESIASKIELPDSFYNLSIDEVKREAELRRKKMADSQLLIPKSLKEKQAKAARRRYRKAMIRIQFPDGVILQGVFNPWEPTTALYEFAGSALKEPCLEFDLMHPALVRRRVIPHFPSAGEKAFTLEDEDLVPSALIKLKPHETDHVVYTGLRNELLEISEPLS 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g0171 467 ProSiteProfiles Zinc finger C2H2 type domain profile. 118 146 IPR013087 -
Acco12g0171 467 MobiDBLite consensus disorder prediction 1 107 - -
Acco12g0171 467 Gene3D - 175 265 - -
Acco12g0171 467 MobiDBLite consensus disorder prediction 19 82 - -
Acco12g0171 467 FunFam UBX domain-containing protein 6 352 443 - -
Acco12g0171 467 CDD PUB 176 265 - -
Acco12g0171 467 SMART PGNneu 182 249 - -
Acco12g0171 467 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 466 - -
Acco12g0171 467 Pfam PUB domain 181 256 IPR018997 -
Acco12g0171 467 SUPERFAMILY Ubiquitin-like 330 442 IPR029071 -
Acco12g0171 467 SUPERFAMILY PUG domain-like 178 264 IPR036339 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g0171 Acco-ChrAcco12 1481440 1485120 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g0171 1 390 C2H2 Transcription Factor Family AT2G01650 53.165 2.52e-139 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Acco12g0171 PUB 2.9e-18 No_clan