Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g0159 ATGGCTCCCCTACCTACTCCTATCCATTTCTTCGAGATTATTGTTGAACAGTCTCTTCAAGAAGGAAGGCTTAAAGTAGCAGATAACTTTATACGAAAGTATGGAGGAAATATGACAAATCCAGTGTATCTGAAGCCTCCAGATGGAACTGAATGGGAAATAAAATGGACAAAATATGAAAGCGGTGAGGTTTGGTTTGAGAAGGGTTGGGATGAAGTTGTTAGATACTACTCTTTAGGTCATGGCCATTTGGTGCTGTTCAAATATGAGAGAACTAAAAAAACTTGTGACTTTAAAGTGAACATCTTTGACATGAGTGCATTAGAAATAGACTACCCTCTTCGCAGAAACCTCCCACAAATTAATGATGATGATTCTGGTTCAATTGAAATCTTGCATGAGAAACCTCCTCTGAATAAAGTAGCCAGCCCAAAACCGCCATCACCATCATCTTCTATTCGCCCTTGCAAGAAAATCAGAGCTGAAGAAGCTGAAAGGACGTCTCATCAGCAAAAGAAGCACTCACATGGGAATGAGCTTAAGTCCATTAAAGCAGAACCGAATCCTATCAAGCTTGAATCAGAAGTTTCTGCAGAAACCGTGGGTAGAAGCAAATTTTCCACTAAAAAAAGTTCAAAAGCCGTGGCTATAAAAAAACGGAAGGAGGAACCATTAACCTGTGATGAGAAGGACAGGGCTTTACAGAGGGTCAACACTTTCACGGCCAAAAATCCCTATTTCAAAATTGTCATCCAGCCAGCATACATCAAGAGCTCTTTGCTTGTACCAGCAAATTTTGTGAAACAGAATTTGAAGCAGAAGAAGGAAGGAAGTGTCCTCCTGCAGGTTTCAGATGGTAGAACTTGGCGTGTCAAGTGCTATAGGGAAGTGGGAAAGCAATACAAATTTCGACTCATCAGTGGGTGGTCCTCTTTTGCAAAAGACAATAACTTGAAAGTAGGTGACGTGTGTGTTTTTGAACTCACAAACTCCATTGATATCTCCTTCCAAGTTCATGTTTTTGGAGATTGTGCGAATCCGTATGGCTGA 1050 0.4076 MAPLPTPIHFFEIIVEQSLQEGRLKVADNFIRKYGGNMTNPVYLKPPDGTEWEIKWTKYESGEVWFEKGWDEVVRYYSLGHGHLVLFKYERTKKTCDFKVNIFDMSALEIDYPLRRNLPQINDDDSGSIEILHEKPPLNKVASPKPPSPSSSIRPCKKIRAEEAERTSHQQKKHSHGNELKSIKAEPNPIKLESEVSAETVGRSKFSTKKSSKAVAIKKRKEEPLTCDEKDRALQRVNTFTAKNPYFKIVIQPAYIKSSLLVPANFVKQNLKQKKEGSVLLQVSDGRTWRVKCYREVGKQYKFRLISGWSSFAKDNNLKVGDVCVFELTNSIDISFQVHVFGDCANPYG 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g0159 349 SMART B3_2 10 106 IPR003340 GO:0003677
Acco12g0159 349 SMART B3_2 246 342 IPR003340 GO:0003677
Acco12g0159 349 Gene3D - 225 344 IPR015300 -
Acco12g0159 349 MobiDBLite consensus disorder prediction 156 181 - -
Acco12g0159 349 Gene3D - 6 107 IPR015300 -
Acco12g0159 349 ProSiteProfiles B3 DNA-binding domain profile. 245 344 IPR003340 GO:0003677
Acco12g0159 349 SUPERFAMILY DNA-binding pseudobarrel domain 7 113 IPR015300 -
Acco12g0159 349 CDD B3_DNA 21 104 IPR003340 GO:0003677
Acco12g0159 349 PANTHER B3 DOMAIN-CONTAINING 7 338 - -
Acco12g0159 349 Pfam B3 DNA binding domain 17 104 IPR003340 GO:0003677
Acco12g0159 349 Pfam B3 DNA binding domain 247 341 IPR003340 GO:0003677
Acco12g0159 349 CDD B3_DNA 245 341 IPR003340 GO:0003677
Acco12g0159 349 SUPERFAMILY DNA-binding pseudobarrel domain 241 342 IPR015300 -
Acco12g0159 349 ProSiteProfiles B3 DNA-binding domain profile. 9 106 IPR003340 GO:0003677
Acco12g0159 349 MobiDBLite consensus disorder prediction 125 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g0159 Acco-ChrAcco12 1393467 1395011 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g0159 4 341 B3 DNA Binding Superfamily AT3G18990 28.926 2.47e-38 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Acco12g0159 B3 3.6e-19 CL0405