Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g0158 ATGGCTGCTATCCGTTTCTTCAAGATTATTCTTGAACATTCTCTTCAAGAAGGAAGGCTTAAAGTACCAGACAACTTTATACGAAAATATGGAGGTACCATGCAAAATCCAGTGTATCTGAAGCCTCCAGATGGGACTGAATGGGAAATACATTGGACCAAATATGAAAGTGGTGAGGTTTGGTTTGAGAAGGGTTGGGATGAAGTTGTTGGATACTACTCTTTAGGTCATGGCCATTTGGTGCTGTTCAAATATGAGGAAACAAGAAGAACTGGTCACTTTAAAGTGAACATTTTCGACAAGAGTGCATTAGAAATAGACTACCCTCTTCACAGAAACATCCCACAAATTAATGATGATTCTGTTTCAATTAAAATCTTGCATGAGAAACCTCCTCTGCATATAGTAGCCAGACCAAAACCGCCATTATTATCATCATCTTCATTTCGCCCTTGCAAGAAAATTAGAGCTGAAGAAGCTGAAAGGACCTGTAATCATCAAAAGAAGCATTCAAATGGGAACAAGCTTAAGCCCATTAAAGCAGAACCGAATCTTGTCAGGCTTGAATCAAAAGGAACCGTGGGCAAAAGCAATTTTTCCACTAAAAAAATTACAAAATCTATGGCTATCAAAAAAGGAAAGGAGAAACCACTAACTTGTGATGAGAAGGAAAGAGCTTTACAGAGAGTCAACACTGTCACGGCCAAAAGTCCCTATTTCAAAATTGTCATGCAGCCAGCATACATCAATAACCATTTGGTTCTGCTCATCCATATGGCTAAAAATTCCCAAGCTATAACGTTGTTTTCCTCTTTTGTTGAGGGAATATGGCTATTTGATTATAAGCTGCTGTCTCTTTATGATTTTGTGAAAGAGGAGTCTGTGCTTCCCAGCACTCGATTCGCACACGAGGACTCCATTTGCGCCTGTAGCCACCGTCCCGTCGTTTGGCCGTGCTTTTGCTGCGGAAATTCAGACACCAGCAGTGCCATAATGGCCTCAATGTTGGCTCGGAAATCACTTCTTGCTCTTCGCACTCGACAATTGGCTGTGGCAGGTCAAGGGTTGCCAGGTCCCCAAAATTATGGCTTGCGATTAAGTGCCCATTCATTCTCTACCAAAAAAGGAGATGAAGAAAGAGAGCAACTTGCAAAGGAAATTTCCAAGGACTGGAGTTCTATCTTTGAACGCAGCATCAACACACTATTTCTCACTGAAATGGTTCGGGGTTTAAGTCTGACACTGAAATACTTCTTTGAGAAAAAAGTTACTATAAATTATCCATTTGAAAAAGGCCCTTTGAGTCCTCGTTTCCGTGGTGAACATGCACTCCGACGATATCCTACTGGAGAGGAACGCTGCATTGCTTGCAAACTTTGTGAAGCTATATGTCCGGCACAAGCAATCACAATTGAAGCTGAGGAGAGAGAAGATGGCAGCCGCAGGACAACAAGGTACGATATTGACATGACCAAGTGCATCTACTGCGGATTATGTCAAGAGGCATGCCCTGTTGATGCCATTGTTGAAGGGCCAAACTTCGAATTTGCTACAGAAACTCACGAGGAGCTTCTATATGACAAAGAGAAGCTACTTGAGAATGGGGACCGATGGGAAACTGAGATTGCTGAGAACCTGAGATCTGAGAGCCTATATCGTTGA 1662 0.4218 MAAIRFFKIILEHSLQEGRLKVPDNFIRKYGGTMQNPVYLKPPDGTEWEIHWTKYESGEVWFEKGWDEVVGYYSLGHGHLVLFKYEETRRTGHFKVNIFDKSALEIDYPLHRNIPQINDDSVSIKILHEKPPLHIVARPKPPLLSSSSFRPCKKIRAEEAERTCNHQKKHSNGNKLKPIKAEPNLVRLESKGTVGKSNFSTKKITKSMAIKKGKEKPLTCDEKERALQRVNTVTAKSPYFKIVMQPAYINNHLVLLIHMAKNSQAITLFSSFVEGIWLFDYKLLSLYDFVKEESVLPSTRFAHEDSICACSHRPVVWPCFCCGNSDTSSAIMASMLARKSLLALRTRQLAVAGQGLPGPQNYGLRLSAHSFSTKKGDEEREQLAKEISKDWSSIFERSINTLFLTEMVRGLSLTLKYFFEKKVTINYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGLCQEACPVDAIVEGPNFEFATETHEELLYDKEKLLENGDRWETEIAENLRSESLYR 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g0158 553 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 445 474 IPR017896 -
Acco12g0158 553 Gene3D - 427 552 - -
Acco12g0158 553 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 484 513 IPR017896 -
Acco12g0158 553 Pfam 4Fe-4S dicluster domain 453 507 IPR017896 -
Acco12g0158 553 SUPERFAMILY DNA-binding pseudobarrel domain 5 102 IPR015300 -
Acco12g0158 553 Gene3D - 2 103 IPR015300 -
Acco12g0158 553 Pfam B3 DNA binding domain 7 101 IPR003340 GO:0003677
Acco12g0158 553 PANTHER NADH DEHYDROGENASE UBIQUINONE IRON-SULFUR PROTEIN 8, MITOCHONDRIAL 382 553 IPR010226 GO:0016020|GO:0016651|GO:0051539
Acco12g0158 553 CDD B3_DNA 5 100 IPR003340 GO:0003677
Acco12g0158 553 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 493 504 IPR017900 -
Acco12g0158 553 SMART B3_2 6 102 IPR003340 GO:0003677
Acco12g0158 553 Hamap NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [ndhI]. 401 537 IPR010226 GO:0016020|GO:0016651|GO:0051539
Acco12g0158 553 FunFam NADH-quinone oxidoreductase subunit I 1 427 550 - -
Acco12g0158 553 NCBIfam NADH-quinone oxidoreductase, chain I 410 531 IPR010226 GO:0016020|GO:0016651|GO:0051539
Acco12g0158 553 SUPERFAMILY 4Fe-4S ferredoxins 427 537 - -
Acco12g0158 553 ProSiteProfiles B3 DNA-binding domain profile. 5 102 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g0158 Acco-ChrAcco12 1383045 1389867 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g0158 6 274 B3 DNA Binding Superfamily AT3G18990 25.874 1.22e-20 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Acco12g0158 B3 2.3e-11 CL0405