Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g0147 ATGGCGTCACGGCGCGATGATGATGCCAACGAGAGGAGAAGCAGAGGCGATGAGGAGGAGATAGCCGCCTTCTCTTCTCTCCTCCACGCCCTCGATCTTGCCGCCTCCAACTGGGCGTGGCCATCCTCCTCTCGTGGAGATGCGAAGATCCCGTCATTGGTGGAGGAAGCCGCCGTCGCCGTCGCCGTCGCCGGGAGCAGAGATAAAATGGGGCAGCCGAAGAATGGCGGAAGGGAGTTTGATAGAGAGAGAGGATGGAGGGGAGTAGAAGACAACAGTCATTTTGCTGCAATGGCTGCTTTGCAGAGAGTGACACAGTCAAGCATGACTACTAGTGTAAGCAACTATGGCACCTGCAAAGGTGGTGGTGGTGCAGCTATTGAGAAGGCGGTTCCTGATCAGTTTCCAGCTGGTCTGAGAGTTCTAGTTGTGGACGATGACATCCTTACTTTGAAAATCATTGAACAAATGTCTCTCAAGTGTCATTATTGTGTCACTACATGTTCTGAGGCTATTGTTGCTTTAAATCTTCTACGAGAAAAAAAAGGCTGTTTTGATGTAGTACTGAGTGACGTTTATATGCCTGACATGGATGGGTATAAGCTCCTAGAACATGTTGGGCTCGAGATGGATCTTCCTGTTATCATGATGTCTGCTGACGGCAGAACAAGTGCTGTGATGAAGGGTATTAGACATGGGGCTTGTGACTATTTGATTAAGCCCGTTCGTGAGGAGGAATTGAGGAATATATGGCAGCACGTTGTTAGGAAAATGTGGAATGAAAACAAAGAACATGAAAATTCTGGCAGTGTGGAAGATAATGATAGGAATAAACAAGGAAATGATGATACTGAATATGCTTCATCTGTAATTGATGCGTCAGAAATAGTTAAAATGCCTAAAAAGAGGGTCAGTTCTAAAGAAGATGACGATGGCGAACTGGAGAACGAAGATCCATCCACATCTAAGAAGCCCCGTGTGGTCTGGTCAGTAGAACTGCATCAACAATTTGTCGGTGCTGTGAACCAACTTGGGCTTGATAAGGCTGTACCAAAGAGAATTCTTGAACTGATGAATGTCCCTGGTTTGACAAGAGAAAATGTTGCTAGTCATCTGCAGAAATTTAGGCTTTATTTGAAGAGAATAAGTGGGGTGGCACAGCAGCAGAATGGGATTCCAAACACAGCCTCTGGGTCTATGGAATCCAGGCTAGGAGGACTTGGAAGGTTAGACATCCAAGCTCTGGCTGCCGCTGGCCAAGTTCCTCCTCAAACATTAGCAGCCCTTCATGCAGAACTCTTAGGTCGTCCAGCCATGGACCAGACAGCTCTTCTGCAAGCTTCCATACAGGGTCCCAAGCATTCCCCTGCTGAACATGCTGTTGCATATTGTCAACCTCTAGTAAAATGCCCTTCCAACATTGCCAAGAATTTTCCTCAATCCATCCTTACTGTGGATGACACGCCTTCAGGCTATGGAGCGTGGCCGCCATCTGATACAATTGGTTCAATGGGACCCAATGGTAATCATGGAAGGGTGAGTGTTCAAAATAATAACATGCTAATGGATGTACTGCAGCACCAGCAAAGGCAGCAGTTCCAGCAAACACAGCAGCATAAGCTCCAGCAGCAATCACCGATGCATGATCAAAGTCGTTCAATCAATGTTCAACCATCTTGCTTGGTGGCTCCCTCTCAAACTTCAGGCACTTTCCAGGTTAACGGTCCTGCTTCTGTCAACCAGAATTCCAGTTTGACTAGGAATGCCCATATGAATTATAGTCCCTTTGCACCCCAATCAAATCATCCTTCATTAAATGTTGCTCAATTTCCTGGTGAGGACACCAAAGCTAAAGGTGTTCTTTGTGGATATGTTGCTCCAGGCTCCATCTCGCATTCTATAAGTGCTAACAATAGCAATACCCAACCGCTTCACAACCCATCTTTGACATTTGGTGCTGTGAGAACTTTGCCAGCTCTTTCACCAACTGTGTCTGACATACAAGTTCCCTATGGTGTTACTAAATCTGGTGATCCAATTGATCAAGTTCATGTAAGGAATCTTGGATTTGTTGGCCAAGGTAGTAGTATTCCTAGTCGGTTTGCTGCTCATGAAATTGAATCACCTGTCAGTGACTTAAGTCAGGGAAAAATCCCTCTAGATAGCAATGGGAACTCAGTGAAGCAGGAGCCAAGTATGGATTTTATGGATAACTCGAAATTGGGCGCCCCCATCTTACAGAGATATCCATCTGATCCCATGAATATGTTCACTGAATAG 2280 0.4596 MASRRDDDANERRSRGDEEEIAAFSSLLHALDLAASNWAWPSSSRGDAKIPSLVEEAAVAVAVAGSRDKMGQPKNGGREFDRERGWRGVEDNSHFAAMAALQRVTQSSMTTSVSNYGTCKGGGGAAIEKAVPDQFPAGLRVLVVDDDILTLKIIEQMSLKCHYCVTTCSEAIVALNLLREKKGCFDVVLSDVYMPDMDGYKLLEHVGLEMDLPVIMMSADGRTSAVMKGIRHGACDYLIKPVREEELRNIWQHVVRKMWNENKEHENSGSVEDNDRNKQGNDDTEYASSVIDASEIVKMPKKRVSSKEDDDGELENEDPSTSKKPRVVWSVELHQQFVGAVNQLGLDKAVPKRILELMNVPGLTRENVASHLQKFRLYLKRISGVAQQQNGIPNTASGSMESRLGGLGRLDIQALAAAGQVPPQTLAALHAELLGRPAMDQTALLQASIQGPKHSPAEHAVAYCQPLVKCPSNIAKNFPQSILTVDDTPSGYGAWPPSDTIGSMGPNGNHGRVSVQNNNMLMDVLQHQQRQQFQQTQQHKLQQQSPMHDQSRSINVQPSCLVAPSQTSGTFQVNGPASVNQNSSLTRNAHMNYSPFAPQSNHPSLNVAQFPGEDTKAKGVLCGYVAPGSISHSISANNSNTQPLHNPSLTFGAVRTLPALSPTVSDIQVPYGVTKSGDPIDQVHVRNLGFVGQGSSIPSRFAAHEIESPVSDLSQGKIPLDSNGNSVKQEPSMDFMDNSKLGAPILQRYPSDPMNMFTE 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g0147 759 NCBIfam myb-like DNA-binding domain, SHAQKYF class 324 377 IPR006447 GO:0003677
Acco12g0147 759 Gene3D - 320 383 - -
Acco12g0147 759 Pfam Response regulator receiver domain 141 250 IPR001789 GO:0000160
Acco12g0147 759 SMART REC_2 139 251 IPR001789 GO:0000160
Acco12g0147 759 FunFam Two-component response regulator 139 276 - -
Acco12g0147 759 Gene3D - 139 313 - -
Acco12g0147 759 SUPERFAMILY Homeodomain-like 321 381 IPR009057 -
Acco12g0147 759 MobiDBLite consensus disorder prediction 262 326 - -
Acco12g0147 759 ProSiteProfiles Response regulatory domain profile. 140 255 IPR001789 GO:0000160
Acco12g0147 759 MobiDBLite consensus disorder prediction 530 549 - -
Acco12g0147 759 MobiDBLite consensus disorder prediction 712 734 - -
Acco12g0147 759 MobiDBLite consensus disorder prediction 262 282 - -
Acco12g0147 759 FunFam Two-component response regulator 320 383 - -
Acco12g0147 759 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 321 380 IPR017930 -
Acco12g0147 759 MobiDBLite consensus disorder prediction 296 310 - -
Acco12g0147 759 Pfam Myb-like DNA-binding domain 326 374 IPR001005 -
Acco12g0147 759 CDD REC_typeB_ARR-like 141 255 - -
Acco12g0147 759 SUPERFAMILY CheY-like 138 263 IPR011006 -
Acco12g0147 759 PANTHER TWO-COMPONENT RESPONSE REGULATOR 139 529 IPR045279 GO:0009736
Acco12g0147 759 MobiDBLite consensus disorder prediction 715 733 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g0147 Acco-ChrAcco12 1290241 1295612 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g0147 173 439 Response Regulator Gene Family AT3G16857 56.098 3.15e-95 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Acco12g0147 Response_reg 5.4e-20 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco12g0147 12 1290241 1295612 Acco12g0147 12 1290241 1295612 ECH