Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g0123 ATGGAGAAACTCCACTCGAGTTTCAGGGTTTCTTTCTTGTATCGTGTCCTTTTGATTCTTTCCATGTTCTTGCTGGCTAAGTCTCAGGATGCAGAGGTTATGGCCATTCTCAAGAACTCCATCAAGGGGTCGGGTTCACTCCAATGGTCCGACCCGGATATCTGCAAATGGGCTCACATTCAATGCAATTCTGCGAAACGGATCACCGCAATTCAGATTGGGAACTTGAACCTGCAAGGCTCTCTGCCAAAGGAACTCTTTCAGCTCACAGAATTACAGCGTTTCGAGTGCCAATCCAACAGTCTTTCAGGGGCATTTCCGTCATTAGCCAGTTCCCTACAACACCTTTACATTTCAGACAATGGGTTCACCTCTATGGCTTCAGATTTCTTCAAGGGCATGTCGATGTTAGAAGAGATAAGAATCGACAATAACCCTTTTCCTCCATGGCGAATTCCAGACATACTCAAAGACTGCGTAGCATTAAAAGCATTATCGGCGCAAAATGTTTCTTTTGTCGGAGAAATTCCTGATTTTTTCGGCAAAGATGGTCCATTTCCAAGTCTGACTAGATTGACTCTGTGTTTCAATCAACTCGTAGGTGGGTTACCTTCAAGCTTCTCAGGTAGTTTAATAGAGACACTATGGGTGAATGGACAAAAGAGTAGTTCTAAACTTAATGGCACACTTGCGGTGTTACAGAACATGACTTCATTGAAGCAGATTTGGGCTCATGGTAATTCCTTCACTGGTCCGATCCCTGACCTGTCGCACCATGATCAATTGTTTGATGTGAGTTTGAGGGATAACCAGTTAACTGGTGTTGTTCCGTCGTCTCTTATGGCTCTTGCTAGTTTGCAAGTGGTGAATTTAACTAACAACTATCTTCAAGGACCCATGCCTGCGTTTAATTCAGGAGTACGTGCGGATATAGAGGGAATAGATCGGTTTTGCACGACCAAGCCTGGTCAGCCATGCAGTTCTTTGGTGAATGCTTTATTGTCTGTGGTTGAACCTTTGGGTTATCCATTGAATTTTGCTCAAAGTTGGAAGGGCAACGATCCTTGTGCTGGGAACTGGTTAGGGATTGTTTGTGCAGGTGGAAATATTACTGTTGTGAATTTTCAGAACATGGGCCTTTCTGGGACTGTTTCTCCTACATTTTCCAGACTCACATCAGTAAAAAAGTTGCTTCTTGCTAACAATAATCTCACTAGTACTGTACCTCAGGAGCTTACAAGTATGCCTCATTTGGAGGAGCTGGATATTTCAAATAATCATATATATGGTGTGTTGCCAACATTTCGGAATGGTGTGATTATTAAATCAGTTGGGAATCCTTATATTGGCAAGGATAAGCCATCTTCTCCGTCGGGGCCTGACTCAAATAATACTTCAGGTAATGGTAAGAAACAGAATTCAAGAATCATTCTTGTTGTTGTTGTGGTGGTCGGGGTTGTCGTTTTACTTGGTGTGCTAGTTTGGGGAGGCATCTGGTTTAACAGAAAAAAGAAGCATTCAAGCAAAATTCAAGTTCCGAATGGCGTAGTGATTCATCCTCAGCGTTCTGGACATAGAAATCACTTGAAAATCAGTGTTGTAGGAGCTGGTTCTAATGCTAATCATGGAGGAGGAACTAATAATGGACAAATTACCAGCACTAGTAATGCAGCTGGTGATGTTCATGTGGTGGAATCTGGGGGTATGGTGATTTCAATTCAAGTTTTAAGAGAAGCTACCAACAATTTCAGTCGCGAGAACATACTGGGGAAGGGCGGTTTCGGCACCGTGTACTTGGGGGAATTGCACGACGGGACGAAGATCGCGGTGAAGAGGATGGAATCTGGAGTGGAGGGTGAGAAGGGGCAGAGTGAATTCAAAGCTGAAATCAATGTACTCACTAGGGTTCGTCATAAGCATTTGGTTGCTCTCATGGGGTATTGCTTAGATGAAAATGAGAGGCTTCTTGTGTATGAGTACATGCCTCAGGGAACTCTAAGTAGACACTTGTTCAACTGGAAAGATGAAGAGTTAAGGCCACTGGAATGGACAAGGAGACTTATCATTGCCTTGGATGTTGCTAGAGGAGTTGAGTATCTTCATGGTTTGGCCCAACAAATTTTCATTCATAGGGATCTCAAACCATCAAACATCCTTCTTGGCGATGATATGCGAGCTAAAGTATCCGACTTTGGATTGGTTCGCCTCGCCCCAGAAGGAAAAGCCTCATTTGAAACCAGACTTGCTGGAACTTTTGGCTATTTGGCACCAGAATATGCAGTAACTGGGCGAGTAACGACGAAGGTTGATGTGTATAGTTTTGGAGTGATTCTTATGGAGATGATAAGTGGGAGGAAAGCACTTGATGATAGCCAGGCTGAAGAGAATGTCCACCTGGCCACATGGTTCCGAAGAATGATGTTGAACAAGGACACATTCCGAAAGGCCATTGATCCAGAAATAGATGCCAATGAGGAAACCCTAGCCAGTATCAAGACAGTTGCAGAGCTAGCCGGCCATTGCTGCGCGAGGGACCCTTATCAGAGGCCGGACATGTGCATCGCCGTGAACGTGCTGGCGCCTCTCGTGGAGGTCTGGAAGCCTGCAGAAGCAAGTTCTTCTGATGACGTTGGTGGGATTGATCTTGATATGGACCTTCCTCAAGCTCTTAAAAAATGGCAGGCTTTTGAAGGAATGAGCTATACCAACACCATGGCCACCAGGGATGCTACTTCTTCATCCTTGATTTCCAGTGCAGATAGTACACAGTCAAGTATACCTCCAAGGCCATTTGGACTTGGAGCTTCTTTCACTTCTTCAGATGGAAGATGA 2832 0.4446 MEKLHSSFRVSFLYRVLLILSMFLLAKSQDAEVMAILKNSIKGSGSLQWSDPDICKWAHIQCNSAKRITAIQIGNLNLQGSLPKELFQLTELQRFECQSNSLSGAFPSLASSLQHLYISDNGFTSMASDFFKGMSMLEEIRIDNNPFPPWRIPDILKDCVALKALSAQNVSFVGEIPDFFGKDGPFPSLTRLTLCFNQLVGGLPSSFSGSLIETLWVNGQKSSSKLNGTLAVLQNMTSLKQIWAHGNSFTGPIPDLSHHDQLFDVSLRDNQLTGVVPSSLMALASLQVVNLTNNYLQGPMPAFNSGVRADIEGIDRFCTTKPGQPCSSLVNALLSVVEPLGYPLNFAQSWKGNDPCAGNWLGIVCAGGNITVVNFQNMGLSGTVSPTFSRLTSVKKLLLANNNLTSTVPQELTSMPHLEELDISNNHIYGVLPTFRNGVIIKSVGNPYIGKDKPSSPSGPDSNNTSGNGKKQNSRIILVVVVVVGVVVLLGVLVWGGIWFNRKKKHSSKIQVPNGVVIHPQRSGHRNHLKISVVGAGSNANHGGGTNNGQITSTSNAAGDVHVVESGGMVISIQVLREATNNFSRENILGKGGFGTVYLGELHDGTKIAVKRMESGVEGEKGQSEFKAEINVLTRVRHKHLVALMGYCLDENERLLVYEYMPQGTLSRHLFNWKDEELRPLEWTRRLIIALDVARGVEYLHGLAQQIFIHRDLKPSNILLGDDMRAKVSDFGLVRLAPEGKASFETRLAGTFGYLAPEYAVTGRVTTKVDVYSFGVILMEMISGRKALDDSQAEENVHLATWFRRMMLNKDTFRKAIDPEIDANEETLASIKTVAELAGHCCARDPYQRPDMCIAVNVLAPLVEVWKPAEASSSDDVGGIDLDMDLPQALKKWQAFEGMSYTNTMATRDATSSSLISSADSTQSSIPPRPFGLGASFTSSDGR 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g0123 943 SMART LRR_typ_2 186 209 IPR003591 -
Acco12g0123 943 SMART LRR_typ_2 111 133 IPR003591 -
Acco12g0123 943 SMART LRR_typ_2 391 414 IPR003591 -
Acco12g0123 943 SMART LRR_typ_2 415 437 IPR003591 -
Acco12g0123 943 MobiDBLite consensus disorder prediction 456 470 - -
Acco12g0123 943 Gene3D Ribonuclease Inhibitor 328 453 IPR032675 -
Acco12g0123 943 SUPERFAMILY Protein kinase-like (PK-like) 562 867 IPR011009 -
Acco12g0123 943 Gene3D Ribonuclease Inhibitor 27 321 IPR032675 -
Acco12g0123 943 SUPERFAMILY L domain-like 38 437 - -
Acco12g0123 943 FunFam Receptor-like kinase TMK4 28 323 - -
Acco12g0123 943 MobiDBLite consensus disorder prediction 450 470 - -
Acco12g0123 943 ProSitePatterns Serine/Threonine protein kinases active-site signature. 708 720 IPR008271 GO:0004672|GO:0006468
Acco12g0123 943 ProSiteProfiles Protein kinase domain profile. 583 863 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco12g0123 943 Gene3D Transferase(Phosphotransferase) domain 1 661 877 - -
Acco12g0123 943 PANTHER OSJNBA0070M12.3 PROTEIN 13 943 - -
Acco12g0123 943 FunFam receptor protein kinase TMK1 661 878 - -
Acco12g0123 943 FunFam Leucine-rich repeat receptor-like kinase 328 452 - -
Acco12g0123 943 MobiDBLite consensus disorder prediction 912 943 - -
Acco12g0123 943 Pfam Leucine rich repeat 387 428 IPR001611 GO:0005515
Acco12g0123 943 ProSitePatterns Protein kinases ATP-binding region signature. 589 611 IPR017441 GO:0005524
Acco12g0123 943 Gene3D Phosphorylase Kinase; domain 1 546 660 - -
Acco12g0123 943 SMART serkin_6 583 863 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco12g0123 943 MobiDBLite consensus disorder prediction 912 929 - -
Acco12g0123 943 Pfam Protein kinase domain 584 853 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco12g0123 943 Pfam Leucine rich repeat N-terminal domain 29 63 IPR013210 -
Acco12g0123 943 Pfam Leucine rich repeat N-terminal domain 331 365 IPR013210 -
Acco12g0123 943 CDD STKc_IRAK 589 852 - -
Acco12g0123 943 FunFam receptor protein kinase TMK1 545 660 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g0123 Acco-ChrAcco12 1061586 1064716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g0123 451 865 Trihelix Transcription Factor Family AT5G38560 37.327 5.39e-74 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Acco12g0123 Pkinase 3.5e-48 CL0016