Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g0122 ATGGGTATCAAGATGCAGAGCCAGCACCACCCTGTGGCTTTGAGGTTCCATGAGCAAACGGGGGGTAAAAGAAAATACACCTTCATTCAGGCTAAAAGAGCTTGGCTCCCAAAGTTTCTGCTGCTGTGGATCATACTGATGATGCTATTCAGTGGGTCCATCTATAATGGTATGGATGCTGATAATAAAGTTAGGAGGAGGGAGGTTCTGGGTAGCCTCTGTGAGCAAAGGGCTAGGATGTTGCAAGATCAATTTAGTGTTAGTGTTAACCATGTCCATGCCCTAGCTATTCTGGTTTCAACCTTCCACTACTACAGAAACCCATCCGCAATTGATCAGGAAACTTTTGCGGAGTATACTGCCAGAACAGCATTTGAGCGGCCATTATTGAATGGAGTGGCCTATGCACAAAGGGTAGTTGACTATGAAAGGGAAAACTTTGAGAGGCAACACGGATGGGTGATAAAGACTATGGAAAGAGAACCCTCCCCGGTTCGAGATGAGTATGGGCCAGTGATATTTGCCCAAGAAACTGTCTCTTATCTTAAGTCTCTTGATATGATGTCGGGGGAGGAGGACCGAGAAAACATTCTGAGGGCTAGGGCCACTGGAAAAGCTGTACTGACTAGCCCATTCAGGTTGCTGGGTTCTCATCATCTTGGTGTGGTGTTGACATTCCCTGTTTACAAATCCAAGCTCTCCCCAGAGCCAACTATGAATGAGCGCATAGAGGCAACTGCTGGATATGTTGGAGGGTCGTTTGATGTTGAATCCCTTGTGGAGAATTTACTTGGGCAGCTTGCTGGTAACCAAGCAATTTTGGTGCATGTGTATGATATCACAAACTCTACTAACCGACTAATCATGTACGGCAACCAATATGAAGAAGGTGACAATTGTCTTGTACATAAAAGCAAGCTTGATTTTGGAGATCCTTACAGGAAACATCAGATGATATGTAGGTATCATCAGAAGGCACCAACATCTTGGACAGCACTTACCACAGCGTTTTTATTCTTTGTGATTGGTTTATTAGTGGGATACATTTTATATGGCGCTGCAATTCATATTGTCAAAGTTGAGGATGATTTCCATGAGATGCAGGAACTGAAAGTTCGAGCTGAAGCTGCTGATGTTGCCAAATCCCAGTTTTTAGCAACTGTTTCTCATGAAATTAGAACACCAATGAATGGCATCCTAGGAATGCTTGGTCTGCTTCTAGATACAGAATTGAGTTCAACTCAACGAGATTATGCTCAGACTGCTCAAGCATGCGGGAAAGCACTGATAGCATTAATAAATGAGGTGCTTGACCGAGCTAAAATTGAAGCTGGCAAGTTAGAGCTGGAAGCAGTTCCATTTGACCTGCGTTCCATACTTGATGATGTCCTTTCTTTATTCTCTGAGAAGTCTAGACACAAAGGTTTAGAGTTGGCGGTCTTTGTTTCTGATAAAGTTCCAGACATTGTTATGGGAGATCCAGGGAGATTCAGACAAATAATAACCAATCTGGTTGGCAACTCTGTCAAATTCACTGAACGGGGGCACATATTTGTCAAGGTTCATCTAGCCGAAAATATAACTACCACAATGAATGGAAAATCTGAGGCTTATCTTAATGGAGGATCAGATGACGTTGCACATATGGCTGGTGGTTATCAGTCCAAAACTCTTAGTGGATGTGATGCAGCTGATGAAAGGAACTGCTGGGATAATTTTAAGCATCTAATTGCTGATGAAGAATTTTGCTTTGATAATGCATCAAGTAAAAAGATGACCACTATTCAAGTTTCTGAGCAAGTCACTCTGATGGTCTGTGTAGAGGATACTGGAATTGGGATTCCCTTTTCTGCCCAGGATAGTATTTTCATGCCTTTTGTGCAGGCAGACAGTTCAACCTCTCGAAACTATGGTGGGACTGGTATTGGATTAAGCATCAGCAAGTGTTTGGTTGAATTAATGGGTGGCCAAATAAACTTCATAAGCCGACCCCAGGTTGGGAGCACATTTTCCTTCACTGCAGGTTTTGGTACATATAAGAAAAATTCAACCAGTGATGTGAAGAAACATAATGCGGAAGATCTACCTTCTAGTTTTAGAGGACTGAAAGCCATAGTGGTTGATGGAAAACCTGTTAGAGCTGCCGTGACTCGATACCATCTGAGGAGGCTTGGGATACTAGCTAATGTTGCTGATAACATCAACAAGGCCGTTGCTTTATGCGGGAAAAACGGTTCATTGACATCTGGAATGTTCCAGGCAGATATAATTTTGGTTGAGAAGGATTCGTGGATATCTGGAGAAGATGGAAGCTTCAATGTTTGGCAACTAGATTGGAAACAGAACGGACATACAATTAAGTTGCCCAAATTGATCCTTCTCGCAACCAATATTAGTAATGTCGAGTTTGATAAAGCTAAGGCTGCTGGTTTTGCGGATACTGTGATCATGAAACCCCTGAGAGCTAGTATGGTAGCCGCTTGTCTTCAGCAGGTTCTTGGTGTGGGGAAGAAGAGACAGCAAGGAAAAGACATGCCTACCACTTATCTTCGAGGCCTTATTTGTGGAAAGAAAATTTTGGTGGTTGATGACAATGTGGTGAACCGGAGGGTTGCTGCAGGTGCATTGAAAAAGTTTGGAGCTGATGTGAAGTGTGTTGAAAGCGGCAAAGCGGCGCTTGAAATGCTTCAATTGCCTCACAGTTTTGATGCCTGCTTCATGGACATCCAAATGCCAGAAATGGATGGATTTGAAGCAACACGGCGAATCCGGCAGATGGAAAGGGAGGAAAATGAGCAGGCAAATGGTGAATCTAATGAAGGAAATGCCTCAAAGAGAGAGTGGCATTTGCCAATATTAGCCATGACAGCTGATGTAATTCATGCTACCTATGATGAGTGCCTGAAATGTGGTATGGATGGATACGTGTCGAAGCCCTTTGAGGAAGAGAATCTCTACCAAGAAGTTGCGAAGTTCTTCAAATCCAAGCCTATCTCAGACTCATGA 3006 0.4325 MGIKMQSQHHPVALRFHEQTGGKRKYTFIQAKRAWLPKFLLLWIILMMLFSGSIYNGMDADNKVRRREVLGSLCEQRARMLQDQFSVSVNHVHALAILVSTFHYYRNPSAIDQETFAEYTARTAFERPLLNGVAYAQRVVDYERENFERQHGWVIKTMEREPSPVRDEYGPVIFAQETVSYLKSLDMMSGEEDRENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLSPEPTMNERIEATAGYVGGSFDVESLVENLLGQLAGNQAILVHVYDITNSTNRLIMYGNQYEEGDNCLVHKSKLDFGDPYRKHQMICRYHQKAPTSWTALTTAFLFFVIGLLVGYILYGAAIHIVKVEDDFHEMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLGLLLDTELSSTQRDYAQTAQACGKALIALINEVLDRAKIEAGKLELEAVPFDLRSILDDVLSLFSEKSRHKGLELAVFVSDKVPDIVMGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAENITTTMNGKSEAYLNGGSDDVAHMAGGYQSKTLSGCDAADERNCWDNFKHLIADEEFCFDNASSKKMTTIQVSEQVTLMVCVEDTGIGIPFSAQDSIFMPFVQADSSTSRNYGGTGIGLSISKCLVELMGGQINFISRPQVGSTFSFTAGFGTYKKNSTSDVKKHNAEDLPSSFRGLKAIVVDGKPVRAAVTRYHLRRLGILANVADNINKAVALCGKNGSLTSGMFQADIILVEKDSWISGEDGSFNVWQLDWKQNGHTIKLPKLILLATNISNVEFDKAKAAGFADTVIMKPLRASMVAACLQQVLGVGKKRQQGKDMPTTYLRGLICGKKILVVDDNVVNRRVAAGALKKFGADVKCVESGKAALEMLQLPHSFDACFMDIQMPEMDGFEATRRIRQMEREENEQANGESNEGNASKREWHLPILAMTADVIHATYDECLKCGMDGYVSKPFEEENLYQEVAKFFKSKPISDS 1001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g0122 1001 Gene3D - 853 999 - -
Acco12g0122 1001 SMART REC_2 857 989 IPR001789 GO:0000160
Acco12g0122 1001 FunFam Histidine kinase 4 111 326 - -
Acco12g0122 1001 CDD REC_hyHK_CKI1_RcsC-like 859 989 - -
Acco12g0122 1001 ProSiteProfiles Histidine kinase domain profile. 387 678 IPR005467 -
Acco12g0122 1001 Pfam CHASE domain 110 290 IPR006189 -
Acco12g0122 1001 ProSiteProfiles CHASE domain profile. 107 319 IPR006189 -
Acco12g0122 1001 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 434 673 IPR036890 -
Acco12g0122 1001 PRINTS Bacterial sensor protein C-terminal signature 621 631 IPR004358 GO:0016310|GO:0016772
Acco12g0122 1001 PRINTS Bacterial sensor protein C-terminal signature 638 656 IPR004358 GO:0016310|GO:0016772
Acco12g0122 1001 PRINTS Bacterial sensor protein C-terminal signature 662 675 IPR004358 GO:0016310|GO:0016772
Acco12g0122 1001 PRINTS Bacterial sensor protein C-terminal signature 603 617 IPR004358 GO:0016310|GO:0016772
Acco12g0122 1001 CDD HisKA 380 441 IPR003661 GO:0000155|GO:0007165
Acco12g0122 1001 ProSiteProfiles Response regulatory domain profile. 703 833 IPR001789 GO:0000160
Acco12g0122 1001 Gene3D CHASE domain 111 326 IPR042240 -
Acco12g0122 1001 FunFam Histidine kinase 3 852 997 - -
Acco12g0122 1001 Pfam Response regulator receiver domain 859 989 IPR001789 GO:0000160
Acco12g0122 1001 ProSiteProfiles Response regulatory domain profile. 858 993 IPR001789 GO:0000160
Acco12g0122 1001 PANTHER TWO-COMPONENT HISTIDINE KINASE 41 990 - -
Acco12g0122 1001 CDD HATPase_EvgS-ArcB-TorS-like 497 674 - -
Acco12g0122 1001 Pfam His Kinase A (phospho-acceptor) domain 380 445 IPR003661 GO:0000155|GO:0007165
Acco12g0122 1001 Gene3D - 444 680 IPR036890 -
Acco12g0122 1001 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 366 446 IPR036097 GO:0000155|GO:0007165
Acco12g0122 1001 SUPERFAMILY CheY-like 856 993 IPR011006 -
Acco12g0122 1001 SMART CHASE_2 107 292 IPR006189 -
Acco12g0122 1001 Gene3D - 58 110 - -
Acco12g0122 1001 Coils Coil 430 450 - -
Acco12g0122 1001 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 590 674 IPR003594 -
Acco12g0122 1001 SUPERFAMILY CheY-like 699 834 IPR011006 -
Acco12g0122 1001 Gene3D - 356 443 - -
Acco12g0122 1001 SMART HKATPase_4 492 678 IPR003594 -
Acco12g0122 1001 SMART HisKA_10 380 445 IPR003661 GO:0000155|GO:0007165
Acco12g0122 1001 FunFam Histidine kinase 4 352 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g0122 Acco-ChrAcco12 1034517 1039903 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g0122 21 1001 Histidine Kinase Gene Family AT2G01830 71.616 0.0 1420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Acco12g0122 CHASE 1.3e-36 CL0165