Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g0081 ATGAACAAACTTGCTTCAACCTTGCCTGCTCGAGACACTAGTGCTAATTCTTCTGATGCGGCTTCCTCAGAAAATAATGGAGCGATCCTACCCAAAAGAAAAAGAAGACCCCCAGGCACACCAGATCCAGATGCAGAGGTGGTGTGTTTGTCACCCAAGACTTTGTTGGAATCAGACAGATATGTGTGTGAGATCTGTAACCAAGGGTTTCAAAGAGACCAGAATCTTCAGATGCATAGAAGAAGACACAAAGTACCATGGAAATTGCTGAAAAGGGAGAGTAATAATACGCAAGAGGTGAAGAAGAAGGTGTTTGTGTGCCCTGAGCCTACTTGTTTGCACCACAATCCTTGCCATGCTCTTGGAGATCTCGTAGGCATCAAGAAGCATTTTAGAAGGAAGCATAGTAATCACAAGCAGTGGGTTTGTGATAAGTGTTCTAAAGGTTATGCTGTGCAGTCTGATTACAAAGCTCACCTCAAAACCTGCGGTACCAGAGGCCATTCTTGTGACTGTGGTCGTGTCTTTTCCAGGGTTGAGAGTTTCATAGAACATCAAGACGCGTGCACTGTACGAACAGCTTCAAGCGCTAGTCCATCTAGTGATCATCAGGCCAATTTAGTTCCATTAATGCAAGGCTTGCCTGTGCCAAAACCACCACCTCCATTATTAACCTCCGACTTACAAAACAATAATAAGCCGCCCTGCACCCCTACTTCTCATAATAAGAGACATAACATTCTAGAAGAACTCCAGCTCCTACGTTGTTCTTCTTCTTCAGACGCTCGAGGAAACCGAGGTTCTTCTGATCATCATGAGGAGGATAACAACAACTACGAAACTGATCAAACCCATCTGAAGCTTTCAATAGGGTCATGCAGTAACAACAACAATAACACAAAGAAGAATGTGTTATTGTTGAAAGAGTATGCGAGTGAAGAGCTAAAGTTGGCTGTGGCTGAGAAGGCTTATGCAGAAGAAGCAAGAAGAGAGGCAAAGAGAGAGATAGAGATGGCTGAGATTGAGTTTGGGAAAGCGAAGAGGATAAGGAAGGAAGCTCAGGAGGAGCTTGAGAAAGCTGAGGCTTTGAAGAAGCAAGCCATGATGAAGATGAGTTCTACTCTTCTGCAAATTACTTGTCACGCTTGTAAGCAACTGTTCCAATCCTCCATTATTGCTGGGGTTTCATCAGAAGAGACCTCTCTTGCTATGAGCTGCATGTCTTCCCCCACCACTGAAGTCGAAGGAGATCAATAA 1257 0.4423 MNKLASTLPARDTSANSSDAASSENNGAILPKRKRRPPGTPDPDAEVVCLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRESNNTQEVKKKVFVCPEPTCLHHNPCHALGDLVGIKKHFRRKHSNHKQWVCDKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACTVRTASSASPSSDHQANLVPLMQGLPVPKPPPPLLTSDLQNNNKPPCTPTSHNKRHNILEELQLLRCSSSSDARGNRGSSDHHEEDNNNYETDQTHLKLSIGSCSNNNNNTKKNVLLLKEYASEELKLAVAEKAYAEEARREAKREIEMAEIEFGKAKRIRKEAQEELEKAEALKKQAMMKMSSTLLQITCHACKQLFQSSIIAGVSSEETSLAMSCMSSPTTEVEGDQ 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g0081 418 SMART c2h2final6 61 83 IPR013087 -
Acco12g0081 418 SMART c2h2final6 105 135 IPR013087 -
Acco12g0081 418 SMART c2h2final6 141 168 IPR013087 -
Acco12g0081 418 Coils Coil 315 370 - -
Acco12g0081 418 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 17 370 IPR031140 -
Acco12g0081 418 FunFam protein indeterminate-domain 12-like 40 111 - -
Acco12g0081 418 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Acco12g0081 418 MobiDBLite consensus disorder prediction 211 243 - -
Acco12g0081 418 Gene3D Classic Zinc Finger 39 109 - -
Acco12g0081 418 MobiDBLite consensus disorder prediction 1 46 - -
Acco12g0081 418 Gene3D Classic Zinc Finger 126 205 - -
Acco12g0081 418 MobiDBLite consensus disorder prediction 258 280 - -
Acco12g0081 418 MobiDBLite consensus disorder prediction 225 242 - -
Acco12g0081 418 MobiDBLite consensus disorder prediction 265 280 - -
Acco12g0081 418 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Acco12g0081 418 MobiDBLite consensus disorder prediction 1 25 - -
Acco12g0081 418 SUPERFAMILY beta-beta-alpha zinc fingers 60 161 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g0081 Acco-ChrAcco12 716623 719151 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g0081 32 209 C2H2 Transcription Factor Family AT2G01940 81.564 1.41e-106 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Acco12g0081 None None None