Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g0074 ATGAGTTGCTGCTGCTGCTGCTTTGAAGCTCGCACGGTGCTTGTGCGTGGCAAGAGGAGGCTCAGGAGCTTGTTTTGGAAGGTTAGAGCTGACATTAAGAGGCAAATGAAGACTGGCTGCTATCGCAACACCAAGAATTTCAATTTCCACTACGATCCTTTTAGCTACTCCCTCAACTTCGACAATGGCAATTTTGCTGTTATTCTAGTTTTCGAAAGCATGCAGACAAGTGAGGAGAATAGCAGTTTGAAGAAGGCGGCAAGTATTGAAATGGCGGGTGGAAAATCAACCAGGTCGAACCCACCACAGGCTAGAAAGAGAGTCGATGCAGTCGATTCTGGGTCTGCTACTGGTCTTGTTCGCGGCAAAGATGGCAGTGCTTTTGCCAAATGTGAAGAGTGCAACAAGAATGTTCCAGTGGCCCTCATCAGCATGCACAGTTGCAGCCTTGATGCTAAAATTAAAATGAATCTGGAGGCTCAGGTTGTGGAAAAGCCTGCTGAGGTCAAGAAGCCAGCGGATAGGAAGAAGCCCAAATCAAGTGAGCCCAAGGCTAAAAAGGCCAAGGTGGAGAAAGTGGAGAAGGGGAAGAAAGGCAAGGATCCTAACAAGCCCAAGCGTCCTCCCACAGCCTTCTTTGTCTTCCTGGAAGAGTTTAGAAAATCTTTTAAGGAGGCAAATCCTGATTCTAAGGATGTTAAAAGGGTTGTTAAAGAGGCAGGTGAGAAGTGGAAATCCTTATCTGATGAGGAGAAGAAGCCTTACTTGGATAGAGCTGCTGAACTCAAGGCAGAGTATGAGAAAGCATTAGAAAGTTATAATGCTGCAGAAGACGGAGCTGATCAAGAGGGTTCTGATAAAGAAAATGCCGCTGAGGAAGTGGGTCAGGAGGAACCTGAGAAGGATGACGCAACAAAGGAAAATGAAGAACTCACTGATGAGGAGTAG 948 0.4652 MSCCCCCFEARTVLVRGKRRLRSLFWKVRADIKRQMKTGCYRNTKNFNFHYDPFSYSLNFDNGNFAVILVFESMQTSEENSSLKKAASIEMAGGKSTRSNPPQARKRVDAVDSGSATGLVRGKDGSAFAKCEECNKNVPVALISMHSCSLDAKIKMNLEAQVVEKPAEVKKPADRKKPKSSEPKAKKAKVEKVEKGKKGKDPNKPKRPPTAFFVFLEEFRKSFKEANPDSKDVKRVVKEAGEKWKSLSDEEKKPYLDRAAELKAEYEKALESYNAAEDGADQEGSDKENAAEEVGQEEPEKDDATKENEELTDEE 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g0074 315 Pfam HMG (high mobility group) box 205 274 IPR009071 -
Acco12g0074 315 MobiDBLite consensus disorder prediction 226 255 - -
Acco12g0074 315 SMART hmgende2 204 275 IPR009071 -
Acco12g0074 315 MobiDBLite consensus disorder prediction 166 205 - -
Acco12g0074 315 MobiDBLite consensus disorder prediction 272 315 - -
Acco12g0074 315 MobiDBLite consensus disorder prediction 85 117 - -
Acco12g0074 315 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 205 274 IPR009071 -
Acco12g0074 315 Gene3D High mobility group box domain 188 288 IPR036910 -
Acco12g0074 315 MobiDBLite consensus disorder prediction 166 209 - -
Acco12g0074 315 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 103 306 - -
Acco12g0074 315 MobiDBLite consensus disorder prediction 272 306 - -
Acco12g0074 315 Coils Coil 256 283 - -
Acco12g0074 315 CDD HMG-box_AtHMGB1-like 206 266 - -
Acco12g0074 315 SUPERFAMILY HMG-box 196 275 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g0074 Acco-ChrAcco12 663952 668173 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Acco12g0074 HMG_box 3.2e-21 CL0114