Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g0073 ATGCCCGCCCAGCTGCTCCAGCGAGATGAAGAAGATGATCCCCTGAACTACCTACCCGATTTAGATAAAAGGGAAAATGATGCCAATATTAATGGGGGAGGGCACAGCGAGGTGTACGGGATCTGGACACCGTCTTCTCCTCGGCCCCGGGGATCGCGTTTTGGCGGGAAAGTGGAGGAAACCCTAGTCCTTGGTTTCGACTCACGAGTGCATGGTTTTGCAGGGCACCTCACAAATCACTCTCTTCACACGAACTTTTCCATGACATCTGGAGCTGGAATGTGAGACGTGGAAAGAGAAGGTCATTTAGATTTCATGGCTCAACTAGACTCTATTTATATCAGTTCATCAGATGATGACCTGGACCTGGACCTGGACCTGGAGGAGACAGAAACCTCTAATTATAGGAACCTCCCAGCATGGGCTGCTAGAGGAAGTGATGCTGGCTATGGTGGAGGGCATGAGCAGGATATTTATTCTAAACGGGAAAATACTTTGAGTGCAAGCTCTTCGAGAGCTTATAATAATTCACAAGTCAAGCACAGTACTAAACCTTGGTCTAGCAACAATGTGCTGAATCACAGAGTAGCACAAAGAGATGAATCTTTCAATTTTTCTGAGAGCAGTAGAACAAATCAGCATCAGACGGTCAGTTCACGAATTGCTAATACTGGTGCTGATTATGGGAAAATGCCGTCCCAACAAGAATCAAGGAGGATCCTTCCATCATATCTTCAGCCATCTACTGAAAAGCCTATTCCATCTCCTCTCAAGTCATTTTCATCAGACATCAGGTTGAACATTTCAAAAGATAATTTGAGCAGAAGCGAGATTCATGATACCCTTAGGAATCATCATAATGGTGCAATTAGGATTCTTCCCTCAACTTTGATGCATGGAAAAAACCTCCCTTCTATGCATTTACCTAGTTCAAGTGAATCTACATATCATTCTGGAGCTGGTGAAGAAAGGGCTTCTGAAACTGATGAAAGGCTAATTTATCAGGCAGCATTGGAGGACCTCAATCAGCCAAAGGTTGAAGCTGTTTTACCTGATGGTTTATTATCTGTATCACTTCTGAGACATCAGAAAATTGCATTGGCTTGGATGCTGCAGAAGGAAAACAGGAGCTTGCATTGCTTGGGAGGAATTCTGGCTGATGATCAGGGCCTTGGGAAGACAATTTCGATGATTGCCCTCATACAAATGCAGAGATCAGTGCAGTCAAAATCAAAAACAGATGAGATGCACTGTCATAAAGCTAAAGCACTAAATTTGGATGAGGATGATGACAATGATAAGGGCAATGTTACTGTAGGACAATCTATAAAGAACAAAGAAATTGGTGATAGAAAACCTTCTAAATCAGTTAGATCGTCTTCTCCACAGGTGCCTGGTAGGAAAAGGCCAGCTGCTGGTACACTGGTTGTCTGCCCTGCTAGTGTTCTACGACAGTGGGCGAGGGAACTGGAAGACAAAGTTGGAGATGAAGCTAAGCTCTCTGTGTTGTTTTATCATGGGTGTAATAGGACAAAGGATCCTGTTGAACTTGCTGATTATGATGTTGTTCTCACAACATATTCTATTGTGACTACTGAAGTTCCAAAGCAACCTTTAGTGGAAGAGGATGAAATTGATGGGAAAAATGAGGAAACATTTGGGTCATCCTCTGAATTTGCTTTTGGTAAGAAGAGGAAAAAGACTTATAATGAAAGCAAAAAGAGTAAAAAGGGTAAAAAGGGAGTTGACAGTTCTTTTGATTGTGCTTCTGGCCCTCTTGCCCAAGTGGCTTGGTTTAGGGTTATTCTTGATGAAGCTCAAGTGATAAAAAATCATAGAACTCAGGTGGCTAGAGCTTGCTGCAGTCTTCGAGCCAAAAGAAGGTGGTGTTTATCTGGTACACCGATTCAAAATAGTATAGACGATTTGTATAGCTACTTCAGATTCCTGAAGTATGATCCTTATGCTGAATACAAGTCTTTCTACAATACAATAAAGGTACCAATATCCAGGAATACTATCCAGGGTTACAAGAAACTTCAAGCGGTTCTGAGGGCTATAATGCTTCGTCGAACAAAAGGAACATTGATTGACGGGGAGCCTATTGTTAATCTACCCCCTAAAACAATTCAGCTGCATAAGGTGGATTTCTCCATTGAGGAGCGTGCGTTCTACACCAAGTTGGAAGCTGATTCACGAACCCAATTTAAGGCATATGCTGCTGCTGGTACAGTCAAGCAAAATTATGCAAATATTCTTTCAATGATTTTACGCCTCCGTCAGGCTTGTGACCACCCATTTCTTGTTAAAGATAATTGTTCTGATGTTGTTGGGGGAATTTCAGTTGAAATGGCAAAAATGCTTCCGAGGGAGATGCTGATTAATCTCTTTAATTGCTTGGAAACATCCTTTGCCATATGTGGTGTTTGCACTGATCCACCTGAAAATCCAGTTGTTACCATGTGTGGCCATGTTTTCTGTTATCAGTGTGTATCAGAATATTTGACGGGGTATGATAATATCTGCCCTGCAGTTGAGTGCAACGAAAAAATTGGTGATGATGTTGTTTTCTCCAAATCTACTTTAAGAAGTGGCATCTCTGGTGCCCTTGGTGATGCTAGATCCGCAAGTTATCAACATGTTGATTTTTCAGTACTACAGCAGAGAAATTACTGTTCATCTAAAATCAAAGCAGTCCTTGAGATTCTGCAGTCATATTATAAAGAAAAGAATCCAGGTTCTGATGGATTGAGTTCCTCAGGATGCAGTAGAAATTCATCTCCTGAAACTTCAGACGATGAAGATTTCTATTCCGGAGGTCGTCCTGCAAAATACACAGGAAAATATTCAGAGTGCTCAACTGAAGGACCAGTAAAGGCTATCGTTTTTTCCCAGTGGAATAGCATGTTGGACTTAGTTGAACATGCACTGGAAGAGTTCTCTATCACGTACAGGAGACTTGATGGCACCATGACACTGGTTGCAAGGGATAATGCTGTTGAAGATTTTAATACTGATCCTGAGGTAATTGTCATGTTGATGTCACTAAAAGCAGGAAACCTCGGGTTAAATATGGCTGCCGCATGCCATGTTATTCTTTTGGATCTTTGGTGGAACCCAACAACTGAAGATCAAGCTGTTGATCGAGCTCATAGAATTGGACAGATCCGTCCTGTTACTGTGACACGGCTTACCATAAAAGATACTGTTGAGGATAGAATACTGGCTCTCCAGGAAGAAAAGAGAAAAATGGTTGCATCTGCTTTTGGTGAAGATCAAGGCGGGGCTTCTGGAACTCGCCTTACAGTGGACGATCTAAAATATCTTTTCATGGTCTAA 3339 0.4205 MPAQLLQRDEEDDPLNYLPDLDKRENDANINGGGHSEVYGIWTPSSPRPRGSRFGGKVEETLVLGFDSRVHGFAGHLTNHSLHTNFSMTSGAGMXDVEREGHLDFMAQLDSIYISSSDDDLDLDLDLEETETSNYRNLPAWAARGSDAGYGGGHEQDIYSKRENTLSASSSRAYNNSQVKHSTKPWSSNNVLNHRVAQRDESFNFSESSRTNQHQTVSSRIANTGADYGKMPSQQESRRILPSYLQPSTEKPIPSPLKSFSSDIRLNISKDNLSRSEIHDTLRNHHNGAIRILPSTLMHGKNLPSMHLPSSSESTYHSGAGEERASETDERLIYQAALEDLNQPKVEAVLPDGLLSVSLLRHQKIALAWMLQKENRSLHCLGGILADDQGLGKTISMIALIQMQRSVQSKSKTDEMHCHKAKALNLDEDDDNDKGNVTVGQSIKNKEIGDRKPSKSVRSSSPQVPGRKRPAAGTLVVCPASVLRQWARELEDKVGDEAKLSVLFYHGCNRTKDPVELADYDVVLTTYSIVTTEVPKQPLVEEDEIDGKNEETFGSSSEFAFGKKRKKTYNESKKSKKGKKGVDSSFDCASGPLAQVAWFRVILDEAQVIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAEYKSFYNTIKVPISRNTIQGYKKLQAVLRAIMLRRTKGTLIDGEPIVNLPPKTIQLHKVDFSIEERAFYTKLEADSRTQFKAYAAAGTVKQNYANILSMILRLRQACDHPFLVKDNCSDVVGGISVEMAKMLPREMLINLFNCLETSFAICGVCTDPPENPVVTMCGHVFCYQCVSEYLTGYDNICPAVECNEKIGDDVVFSKSTLRSGISGALGDARSASYQHVDFSVLQQRNYCSSKIKAVLEILQSYYKEKNPGSDGLSSSGCSRNSSPETSDDEDFYSGGRPAKYTGKYSECSTEGPVKAIVFSQWNSMLDLVEHALEEFSITYRRLDGTMTLVARDNAVEDFNTDPEVIVMLMSLKAGNLGLNMAAACHVILLDLWWNPTTEDQAVDRAHRIGQIRPVTVTRLTIKDTVEDRILALQEEKRKMVASAFGEDQGGASGTRLTVDDLKYLFMV 1112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g0073 1112 Gene3D - 327 422 IPR038718 -
Acco12g0073 1112 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 166 1111 - -
Acco12g0073 1112 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 801 857 IPR013083 -
Acco12g0073 1112 MobiDBLite consensus disorder prediction 1 34 - -
Acco12g0073 1112 CDD SF2_C_SNF 959 1064 - -
Acco12g0073 1112 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 343 691 IPR027417 -
Acco12g0073 1112 SUPERFAMILY RING/U-box 803 852 - -
Acco12g0073 1112 MobiDBLite consensus disorder prediction 305 319 - -
Acco12g0073 1112 Gene3D - 706 1111 IPR027417 -
Acco12g0073 1112 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 454 543 - -
Acco12g0073 1112 MobiDBLite consensus disorder prediction 411 435 - -
Acco12g0073 1112 MobiDBLite consensus disorder prediction 169 236 - -
Acco12g0073 1112 Gene3D - 555 702 IPR038718 -
Acco12g0073 1112 SMART ultradead3 355 670 IPR014001 -
Acco12g0073 1112 ProSitePatterns Zinc finger RING-type signature. 822 831 IPR017907 -
Acco12g0073 1112 SMART ring_2 807 845 IPR001841 -
Acco12g0073 1112 Pfam Helicase conserved C-terminal domain 956 1054 IPR001650 -
Acco12g0073 1112 MobiDBLite consensus disorder prediction 301 328 - -
Acco12g0073 1112 Gene3D - 456 545 IPR038718 -
Acco12g0073 1112 Pfam SNF2-related domain 362 768 IPR000330 GO:0005524|GO:0140658
Acco12g0073 1112 ProSiteProfiles Zinc finger RING-type profile. 807 843 IPR001841 -
Acco12g0073 1112 MobiDBLite consensus disorder prediction 411 471 - -
Acco12g0073 1112 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 572 703 - -
Acco12g0073 1112 MobiDBLite consensus disorder prediction 914 939 - -
Acco12g0073 1112 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 374 653 IPR014001 -
Acco12g0073 1112 CDD DEXDc_SHPRH-like 359 691 - -
Acco12g0073 1112 SMART helicmild6 971 1054 IPR001650 -
Acco12g0073 1112 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 944 1107 IPR001650 -
Acco12g0073 1112 MobiDBLite consensus disorder prediction 1 30 - -
Acco12g0073 1112 Pfam Zinc finger, C3HC4 type (RING finger) 807 843 - -
Acco12g0073 1112 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 699 1111 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g0073 Acco-ChrAcco12 649811 657666 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g0073 120 1012 RAD5 or RAD16-like Gene Family AT1G50410 53.982 0.0 865
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Acco12g0073 SNF2_N 2e-69 CL0023