Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g0072 ATGCAGCGAAGCGCTGCCTGTAAATACTCTAATTCATTAATACTATCGTCGTTCGTTTTCGTTTGTGAAATTTCTTCTTTGGCAACTGGTTGTTTGAAAGTGGAGGGAACCCTAGGCTCAAGTGTATGGTCCAGTGATACAGCCTTCAATTTGCTCTCTAAAGGTCGATCTTTCTTTCACATTGAAGGTAGCTTAATAAGGGAGCTGGAACATGGTTCAAGCTCCAGACATATGCTTGACTTGTGGATCATTTTCATGATTCCATCAACTCAACTTGGCGATTCATCGGATGATGATTTGGAGCTGGAGGAGATAGAAAATCCAAATTATGGAAATCGTTCTGGTGGGCCTGCTCGTGAAAGCAATGCAGGTTATGGTGGAGGGTTTACACTTGATAGTTCTTTGAGACTGGCAAATACTTCAAATGCAAGCTCTTCTGGTGCTTATAATCATTCACCATCTGAGCACTATACTGAACCTGGGTCCAGCAGTTATATGCCAAATCGCGGATTTGCACATGGAGATGGATCTTTCAATATTTTGAAGAATGGTTACACAATTCAGTTTCAAACAGTCAATTCTACAATTGCTAAATCTTCTGGTTCTGATTATGAGAAAATACCATCACAACAAGCTTTTAAGAGGACCCTTTCATCATCGCTTCTTCCAGCTGCAATGAAGCCATTTCCATCCTCCCTTCAGTCATTTGCACCAGGAAGTAGCATGAGCAGTGACCAGAGCACTTTGCGTGATAACTATGGCAGGGGCAATGATGAGCGTGTGATGTATCAAAATGGTGGGATTAGGATGCTTCCTCCACCTATGATTCATGGCGCAGGGGACGAAAGGACCTCGGAAAACGATGAGAGACTAATTTATCAGGCAGCACTGGAGGATCTCAATCAGCCAAAAGTTGAAGCTAATTTACCTGAGGGTTTATTGTCTGTGTCGCTTCTGAGACATCAGAAAATTGCATTGGCTTGGATGGTTCAGAAGGAAACCAGAAGTTTGCATTGCTTGGGGGGGATTCTGGCTGATGATCAAGGTCTTGGAAAGACAATTTCGATGATTGCCCTCATACAAATGCAGAGGCAATTGCAGTCAAAATCAAAAGCAGATGAGATGTCCAATCATAAAGCTGAAGCATTAAATTTGGATGAGGATGATGAAAATGATAATGCTGGTGGTACTGGAAAGAATGAAGAAGATGATACAAAACCTATTCCTGAATCATCTAGTTCATCTTCCACAAGGGTTGTTGGCAGGAAAAGACCGGCTGCTGGTACACTGGTTGTTTGCCCTGCCAGTGTTCTTCGACAGTGGGCACGGGAACTGGATGACAAAGTAGGAGATGAAGCTAAGCTCTCTGTGTTGATTTATCATGGGGGTAATAGGACAAAGGATCCTGTTGAACTTGCAAAATATGATGTTGTTCTCACAACTTATTCTATTGTAACTAATGAAGTTCCAAAGCAACCTATAGTTGAAGAGGATGAAATTGATGAAAAAATGGGGGAAAGATTTGGGTTATCCTCTGAGTTTGCTTTTGGTAAAAAGAGGAAAAAGGCTTATAATGCAAATAAAAAGAGTAAAAAAGGTAAAAAGGGACTCGACAGTTCTTTTGACTGTGCATCGGGTGCCCTCGCAAAAGTTGGCTGGTTCAGGGTCATTCTAGATGAAGCTCAGACAATAAAGAATCATAGAACTCAGGTGGCTAGAGCTTGCTGCAGCCTTCGAGCCAAAAGAAGGTGGTGTTTATCTGGAACACCTATTCAAAATGCTATTGAAGATCTCTATAGCTACTTTAGATTCCTGAAGTATGATCCTTATGCTGTATATAAATCATTCTACAATACAATAAAAGTGCCAATATCCAAAAATTCTATTCAAGGTTACAAGAAGCTTCAAGCTGTTCTAAGGGCTATAATGCTTCGTCGTACTAAAGGAACATTGATTAATGGAGAGCCTATAATCACTCTGCCCCCTAAAACTATAACGCTGAATAAGGTGGATTTCTCCCTTGAGGAGCGGGCCTTCTACACCAAGTTGGAAGCAGATTCACGTAGTCAATTTAAGGCATACGCTGCTGCCGGTACAGTCAATCAAAATTATGCAAATATTCTTTTAATGCTTTTACGTCTCCGTCAGGCTTGTGATCACCCACTTCTCGTCAAAGATTATAGCTCTGATTTTGTTGGGGAAAATTCGATAGAAATGGCCAAAACGCTTCCAAAGGAGATGCTAGTTAATCTTTTCAATTGTTTGGAAGCATCCTTTGCAATTTGTAAAGTTTGCAATCTAATTCTTCTTGTACTGTGGTTTCCACAGGATACACCTGAAGATCCAGTTGTCACGATGTGTGGCCATGTCTTCTGTTATCAGTGCGTATCCGAACATTTGACAGGTTATGAAAATATGTGCCCAGCTGCTGATTGTAAAGAACAAATCGGTGATGATGTTGTTTTCTCCAAAGCAGCATTAAGAAGTTGCATCTCCAGTGATACTGGCGATAGTAGTTCTTCAGCTTCAGGCCTTGTTGATTATTCAGCTGTGCAGCAGAGTAGTTATAGTTCGTCTAAAATCAAGGCACTCCTTGAGATTCTGGAGCTACATTGTTGCTCTGGTCGTGCTAGATATTCACTGCCTTCCGAAACTACAGATATCGAAAACTTGGATTCAGATGTGGTTGTTACAGGGGACACAAGAAAATGTTCAGAGGGCACAACCGATGGACCAATAAAGGCAATTGTTTTTTCTCAGTGGACCAGCATGTTGGACTTAGTTGAAGATTCACTGAAGGACTCTGGCATTCGACACAGGAGACTTGATGGTACCATGACACTCGCTGCGAGGGATAAGTCTGTCAAGGATTTTAATACTAATCCTGAGGTAACTGTCTTGCTGATGTCACTAAAAGCAGGAAACCTTGGTTTGAACTTGGTTGCTGCTTGCCATGTTATTCTTTTAGATCTTTGGTGGAATCCAACAACCGAAGAACAAGCTATTGATCGAGCTCACAGGATTGGACAGACGCGTCCTGTTACTGTGACACGGCTCACTATAAGAGAGACGGTTGAAGATAGAATCTTGGCTCTCCAGGAAGACAAGAAAAAGATGGTAGCATCTGCTTTCGGGGAAGATCAAGCGGGCGGGATGGCAACTCGCCTAACAGTGGATGACCTAAAGTATCTTTTCATGGTGTGA 3204 0.4189 MQRSAACKYSNSLILSSFVFVCEISSLATGCLKVEGTLGSSVWSSDTAFNLLSKGRSFFHIEGSLIRELEHGSSSRHMLDLWIIFMIPSTQLGDSSDDDLELEEIENPNYGNRSGGPARESNAGYGGGFTLDSSLRLANTSNASSSGAYNHSPSEHYTEPGSSSYMPNRGFAHGDGSFNILKNGYTIQFQTVNSTIAKSSGSDYEKIPSQQAFKRTLSSSLLPAAMKPFPSSLQSFAPGSSMSSDQSTLRDNYGRGNDERVMYQNGGIRMLPPPMIHGAGDERTSENDERLIYQAALEDLNQPKVEANLPEGLLSVSLLRHQKIALAWMVQKETRSLHCLGGILADDQGLGKTISMIALIQMQRQLQSKSKADEMSNHKAEALNLDEDDENDNAGGTGKNEEDDTKPIPESSSSSSTRVVGRKRPAAGTLVVCPASVLRQWARELDDKVGDEAKLSVLIYHGGNRTKDPVELAKYDVVLTTYSIVTNEVPKQPIVEEDEIDEKMGERFGLSSEFAFGKKRKKAYNANKKSKKGKKGLDSSFDCASGALAKVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNAIEDLYSYFRFLKYDPYAVYKSFYNTIKVPISKNSIQGYKKLQAVLRAIMLRRTKGTLINGEPIITLPPKTITLNKVDFSLEERAFYTKLEADSRSQFKAYAAAGTVNQNYANILLMLLRLRQACDHPLLVKDYSSDFVGENSIEMAKTLPKEMLVNLFNCLEASFAICKVCNLILLVLWFPQDTPEDPVVTMCGHVFCYQCVSEHLTGYENMCPAADCKEQIGDDVVFSKAALRSCISSDTGDSSSSASGLVDYSAVQQSSYSSSKIKALLEILELHCCSGRARYSLPSETTDIENLDSDVVVTGDTRKCSEGTTDGPIKAIVFSQWTSMLDLVEDSLKDSGIRHRRLDGTMTLAARDKSVKDFNTNPEVTVLLMSLKAGNLGLNLVAACHVILLDLWWNPTTEEQAIDRAHRIGQTRPVTVTRLTIRETVEDRILALQEDKKKMVASAFGEDQAGGMATRLTVDDLKYLFMV 1067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g0072 1067 Pfam Zinc finger, C3HC4 type (RING finger) 777 808 IPR018957 GO:0046872
Acco12g0072 1067 MobiDBLite consensus disorder prediction 371 385 - -
Acco12g0072 1067 Gene3D - 412 501 IPR038718 -
Acco12g0072 1067 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 409 498 - -
Acco12g0072 1067 ProSiteProfiles Zinc finger RING-type profile. 762 808 IPR001841 -
Acco12g0072 1067 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 780 824 IPR013083 -
Acco12g0072 1067 MobiDBLite consensus disorder prediction 235 255 - -
Acco12g0072 1067 ProSitePatterns Zinc finger RING-type signature. 787 796 IPR017907 -
Acco12g0072 1067 MobiDBLite consensus disorder prediction 369 422 - -
Acco12g0072 1067 SMART helicmild6 926 1009 IPR001650 -
Acco12g0072 1067 MobiDBLite consensus disorder prediction 142 165 - -
Acco12g0072 1067 SUPERFAMILY RING/U-box 777 824 - -
Acco12g0072 1067 Gene3D - 661 1066 IPR027417 -
Acco12g0072 1067 MobiDBLite consensus disorder prediction 142 168 - -
Acco12g0072 1067 CDD DEXDc_SHPRH-like 318 646 - -
Acco12g0072 1067 MobiDBLite consensus disorder prediction 392 408 - -
Acco12g0072 1067 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 303 646 IPR027417 -
Acco12g0072 1067 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 890 1062 IPR001650 -
Acco12g0072 1067 SMART ultradead3 314 625 IPR014001 -
Acco12g0072 1067 Pfam Helicase conserved C-terminal domain 914 1009 IPR001650 -
Acco12g0072 1067 SMART ring_2 762 810 IPR001841 -
Acco12g0072 1067 Gene3D - 517 657 IPR038718 -
Acco12g0072 1067 Gene3D - 290 378 IPR038718 -
Acco12g0072 1067 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 527 658 - -
Acco12g0072 1067 CDD SF2_C_SNF 914 1019 - -
Acco12g0072 1067 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 164 1066 - -
Acco12g0072 1067 Pfam SNF2-related domain 325 723 IPR000330 GO:0005524|GO:0140658
Acco12g0072 1067 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 654 1066 IPR027417 -
Acco12g0072 1067 MobiDBLite consensus disorder prediction 235 251 - -
Acco12g0072 1067 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 333 608 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g0072 Acco-ChrAcco12 641171 649522 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g0072 95 967 RAD5 or RAD16-like Gene Family AT1G50410 55.373 0.0 897
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Acco12g0072 SNF2_N 1.8e-67 CL0023