Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Acco12g0072 | ATGCAGCGAAGCGCTGCCTGTAAATACTCTAATTCATTAATACTATCGTCGTTCGTTTTCGTTTGTGAAATTTCTTCTTTGGCAACTGGTTGTTTGAAAGTGGAGGGAACCCTAGGCTCAAGTGTATGGTCCAGTGATACAGCCTTCAATTTGCTCTCTAAAGGTCGATCTTTCTTTCACATTGAAGGTAGCTTAATAAGGGAGCTGGAACATGGTTCAAGCTCCAGACATATGCTTGACTTGTGGATCATTTTCATGATTCCATCAACTCAACTTGGCGATTCATCGGATGATGATTTGGAGCTGGAGGAGATAGAAAATCCAAATTATGGAAATCGTTCTGGTGGGCCTGCTCGTGAAAGCAATGCAGGTTATGGTGGAGGGTTTACACTTGATAGTTCTTTGAGACTGGCAAATACTTCAAATGCAAGCTCTTCTGGTGCTTATAATCATTCACCATCTGAGCACTATACTGAACCTGGGTCCAGCAGTTATATGCCAAATCGCGGATTTGCACATGGAGATGGATCTTTCAATATTTTGAAGAATGGTTACACAATTCAGTTTCAAACAGTCAATTCTACAATTGCTAAATCTTCTGGTTCTGATTATGAGAAAATACCATCACAACAAGCTTTTAAGAGGACCCTTTCATCATCGCTTCTTCCAGCTGCAATGAAGCCATTTCCATCCTCCCTTCAGTCATTTGCACCAGGAAGTAGCATGAGCAGTGACCAGAGCACTTTGCGTGATAACTATGGCAGGGGCAATGATGAGCGTGTGATGTATCAAAATGGTGGGATTAGGATGCTTCCTCCACCTATGATTCATGGCGCAGGGGACGAAAGGACCTCGGAAAACGATGAGAGACTAATTTATCAGGCAGCACTGGAGGATCTCAATCAGCCAAAAGTTGAAGCTAATTTACCTGAGGGTTTATTGTCTGTGTCGCTTCTGAGACATCAGAAAATTGCATTGGCTTGGATGGTTCAGAAGGAAACCAGAAGTTTGCATTGCTTGGGGGGGATTCTGGCTGATGATCAAGGTCTTGGAAAGACAATTTCGATGATTGCCCTCATACAAATGCAGAGGCAATTGCAGTCAAAATCAAAAGCAGATGAGATGTCCAATCATAAAGCTGAAGCATTAAATTTGGATGAGGATGATGAAAATGATAATGCTGGTGGTACTGGAAAGAATGAAGAAGATGATACAAAACCTATTCCTGAATCATCTAGTTCATCTTCCACAAGGGTTGTTGGCAGGAAAAGACCGGCTGCTGGTACACTGGTTGTTTGCCCTGCCAGTGTTCTTCGACAGTGGGCACGGGAACTGGATGACAAAGTAGGAGATGAAGCTAAGCTCTCTGTGTTGATTTATCATGGGGGTAATAGGACAAAGGATCCTGTTGAACTTGCAAAATATGATGTTGTTCTCACAACTTATTCTATTGTAACTAATGAAGTTCCAAAGCAACCTATAGTTGAAGAGGATGAAATTGATGAAAAAATGGGGGAAAGATTTGGGTTATCCTCTGAGTTTGCTTTTGGTAAAAAGAGGAAAAAGGCTTATAATGCAAATAAAAAGAGTAAAAAAGGTAAAAAGGGACTCGACAGTTCTTTTGACTGTGCATCGGGTGCCCTCGCAAAAGTTGGCTGGTTCAGGGTCATTCTAGATGAAGCTCAGACAATAAAGAATCATAGAACTCAGGTGGCTAGAGCTTGCTGCAGCCTTCGAGCCAAAAGAAGGTGGTGTTTATCTGGAACACCTATTCAAAATGCTATTGAAGATCTCTATAGCTACTTTAGATTCCTGAAGTATGATCCTTATGCTGTATATAAATCATTCTACAATACAATAAAAGTGCCAATATCCAAAAATTCTATTCAAGGTTACAAGAAGCTTCAAGCTGTTCTAAGGGCTATAATGCTTCGTCGTACTAAAGGAACATTGATTAATGGAGAGCCTATAATCACTCTGCCCCCTAAAACTATAACGCTGAATAAGGTGGATTTCTCCCTTGAGGAGCGGGCCTTCTACACCAAGTTGGAAGCAGATTCACGTAGTCAATTTAAGGCATACGCTGCTGCCGGTACAGTCAATCAAAATTATGCAAATATTCTTTTAATGCTTTTACGTCTCCGTCAGGCTTGTGATCACCCACTTCTCGTCAAAGATTATAGCTCTGATTTTGTTGGGGAAAATTCGATAGAAATGGCCAAAACGCTTCCAAAGGAGATGCTAGTTAATCTTTTCAATTGTTTGGAAGCATCCTTTGCAATTTGTAAAGTTTGCAATCTAATTCTTCTTGTACTGTGGTTTCCACAGGATACACCTGAAGATCCAGTTGTCACGATGTGTGGCCATGTCTTCTGTTATCAGTGCGTATCCGAACATTTGACAGGTTATGAAAATATGTGCCCAGCTGCTGATTGTAAAGAACAAATCGGTGATGATGTTGTTTTCTCCAAAGCAGCATTAAGAAGTTGCATCTCCAGTGATACTGGCGATAGTAGTTCTTCAGCTTCAGGCCTTGTTGATTATTCAGCTGTGCAGCAGAGTAGTTATAGTTCGTCTAAAATCAAGGCACTCCTTGAGATTCTGGAGCTACATTGTTGCTCTGGTCGTGCTAGATATTCACTGCCTTCCGAAACTACAGATATCGAAAACTTGGATTCAGATGTGGTTGTTACAGGGGACACAAGAAAATGTTCAGAGGGCACAACCGATGGACCAATAAAGGCAATTGTTTTTTCTCAGTGGACCAGCATGTTGGACTTAGTTGAAGATTCACTGAAGGACTCTGGCATTCGACACAGGAGACTTGATGGTACCATGACACTCGCTGCGAGGGATAAGTCTGTCAAGGATTTTAATACTAATCCTGAGGTAACTGTCTTGCTGATGTCACTAAAAGCAGGAAACCTTGGTTTGAACTTGGTTGCTGCTTGCCATGTTATTCTTTTAGATCTTTGGTGGAATCCAACAACCGAAGAACAAGCTATTGATCGAGCTCACAGGATTGGACAGACGCGTCCTGTTACTGTGACACGGCTCACTATAAGAGAGACGGTTGAAGATAGAATCTTGGCTCTCCAGGAAGACAAGAAAAAGATGGTAGCATCTGCTTTCGGGGAAGATCAAGCGGGCGGGATGGCAACTCGCCTAACAGTGGATGACCTAAAGTATCTTTTCATGGTGTGA | 3204 | 0.4189 | MQRSAACKYSNSLILSSFVFVCEISSLATGCLKVEGTLGSSVWSSDTAFNLLSKGRSFFHIEGSLIRELEHGSSSRHMLDLWIIFMIPSTQLGDSSDDDLELEEIENPNYGNRSGGPARESNAGYGGGFTLDSSLRLANTSNASSSGAYNHSPSEHYTEPGSSSYMPNRGFAHGDGSFNILKNGYTIQFQTVNSTIAKSSGSDYEKIPSQQAFKRTLSSSLLPAAMKPFPSSLQSFAPGSSMSSDQSTLRDNYGRGNDERVMYQNGGIRMLPPPMIHGAGDERTSENDERLIYQAALEDLNQPKVEANLPEGLLSVSLLRHQKIALAWMVQKETRSLHCLGGILADDQGLGKTISMIALIQMQRQLQSKSKADEMSNHKAEALNLDEDDENDNAGGTGKNEEDDTKPIPESSSSSSTRVVGRKRPAAGTLVVCPASVLRQWARELDDKVGDEAKLSVLIYHGGNRTKDPVELAKYDVVLTTYSIVTNEVPKQPIVEEDEIDEKMGERFGLSSEFAFGKKRKKAYNANKKSKKGKKGLDSSFDCASGALAKVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNAIEDLYSYFRFLKYDPYAVYKSFYNTIKVPISKNSIQGYKKLQAVLRAIMLRRTKGTLINGEPIITLPPKTITLNKVDFSLEERAFYTKLEADSRSQFKAYAAAGTVNQNYANILLMLLRLRQACDHPLLVKDYSSDFVGENSIEMAKTLPKEMLVNLFNCLEASFAICKVCNLILLVLWFPQDTPEDPVVTMCGHVFCYQCVSEHLTGYENMCPAADCKEQIGDDVVFSKAALRSCISSDTGDSSSSASGLVDYSAVQQSSYSSSKIKALLEILELHCCSGRARYSLPSETTDIENLDSDVVVTGDTRKCSEGTTDGPIKAIVFSQWTSMLDLVEDSLKDSGIRHRRLDGTMTLAARDKSVKDFNTNPEVTVLLMSLKAGNLGLNLVAACHVILLDLWWNPTTEEQAIDRAHRIGQTRPVTVTRLTIRETVEDRILALQEDKKKMVASAFGEDQAGGMATRLTVDDLKYLFMV | 1067 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Acco12g0072 | 1067 | Pfam | Zinc finger, C3HC4 type (RING finger) | 777 | 808 | IPR018957 | GO:0046872 | |
Acco12g0072 | 1067 | MobiDBLite | consensus disorder prediction | 371 | 385 | - | - | |
Acco12g0072 | 1067 | Gene3D | - | 412 | 501 | IPR038718 | - | |
Acco12g0072 | 1067 | FunFam | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein | 409 | 498 | - | - | |
Acco12g0072 | 1067 | ProSiteProfiles | Zinc finger RING-type profile. | 762 | 808 | IPR001841 | - | |
Acco12g0072 | 1067 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 780 | 824 | IPR013083 | - | |
Acco12g0072 | 1067 | MobiDBLite | consensus disorder prediction | 235 | 255 | - | - | |
Acco12g0072 | 1067 | ProSitePatterns | Zinc finger RING-type signature. | 787 | 796 | IPR017907 | - | |
Acco12g0072 | 1067 | MobiDBLite | consensus disorder prediction | 369 | 422 | - | - | |
Acco12g0072 | 1067 | SMART | helicmild6 | 926 | 1009 | IPR001650 | - | |
Acco12g0072 | 1067 | MobiDBLite | consensus disorder prediction | 142 | 165 | - | - | |
Acco12g0072 | 1067 | SUPERFAMILY | RING/U-box | 777 | 824 | - | - | |
Acco12g0072 | 1067 | Gene3D | - | 661 | 1066 | IPR027417 | - | |
Acco12g0072 | 1067 | MobiDBLite | consensus disorder prediction | 142 | 168 | - | - | |
Acco12g0072 | 1067 | CDD | DEXDc_SHPRH-like | 318 | 646 | - | - | |
Acco12g0072 | 1067 | MobiDBLite | consensus disorder prediction | 392 | 408 | - | - | |
Acco12g0072 | 1067 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 303 | 646 | IPR027417 | - | |
Acco12g0072 | 1067 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 890 | 1062 | IPR001650 | - | |
Acco12g0072 | 1067 | SMART | ultradead3 | 314 | 625 | IPR014001 | - | |
Acco12g0072 | 1067 | Pfam | Helicase conserved C-terminal domain | 914 | 1009 | IPR001650 | - | |
Acco12g0072 | 1067 | SMART | ring_2 | 762 | 810 | IPR001841 | - | |
Acco12g0072 | 1067 | Gene3D | - | 517 | 657 | IPR038718 | - | |
Acco12g0072 | 1067 | Gene3D | - | 290 | 378 | IPR038718 | - | |
Acco12g0072 | 1067 | FunFam | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein | 527 | 658 | - | - | |
Acco12g0072 | 1067 | CDD | SF2_C_SNF | 914 | 1019 | - | - | |
Acco12g0072 | 1067 | PANTHER | TRANSCRIPTION TERMINATION FACTOR 2-RELATED | 164 | 1066 | - | - | |
Acco12g0072 | 1067 | Pfam | SNF2-related domain | 325 | 723 | IPR000330 | GO:0005524|GO:0140658 | |
Acco12g0072 | 1067 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 654 | 1066 | IPR027417 | - | |
Acco12g0072 | 1067 | MobiDBLite | consensus disorder prediction | 235 | 251 | - | - | |
Acco12g0072 | 1067 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 333 | 608 | IPR014001 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Acco12g0072 | Acco-ChrAcco12 | 641171 | 649522 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Acco12g0072 | 95 | 967 | RAD5 or RAD16-like Gene Family | AT1G50410 | 55.373 | 0.0 | 897 |