Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g0052 ATGCATGAGAATCCTTATATCATTTGTACCTATTTCACTTCAAATTTCGTTGTTCTGTGTTGCGGTGCGGGTCCCTTCCCCGCCGTATCTCAGTATCTAGTCGTCGGAGAAAGCATGGCCGAATCACCCTCTCCGACGCCTGAGCTACCCCTACCGGAATCCGACGATTCGCAGTACTGGTGCTACCACTGCGACAAGCGTGTGTCCGTGGAGACGCATCCTGAGGGCCCGGATATTCTCTGCCTCGAGTGCAAGCATGGGTTCGTCGAATCGATTCCCTCGCCGTCTTTGGCTCCACCCTTCACGACTTCTGATCTGATTGACGATCCTCATTTTGAATCGCAATTTCTGCGCGTACTGCGACTACTTTCAGAGTCTGCGCGTGATGAAGACGCGCCTCCTCCTCCATCTCGAAACCGCTCCTCAGGCGATGATTTTCTCAGGGTTGAGTTTGAGGATTGGGATGACGATGAAGAAAGCAGCAACAACAATAACAACGACGAGGACGACGAAGATGATGGGGTGGAGTTTCGCGATGAAGGAGAAGAGCGCGAAGGTGCTGAAGAGCATGAAGATGGAGTAGGAGTAGAAGACCTAAGTGGAGACGAAGCTGAAGAATATCTGAGAAGGAGGAGTATGCGGAACCGGATCAGAGACTTGACCAGTCGGATCAGAGACCTGGCAACCGGCACGAGGAGCAGGAGGAACAGGATCTTGGATTGGGCTGATATACTGATGGGTCTTGAAGACAATTCCATAGAACTAAGACTTCAAGTGCCCGATTCGGATCGATTTTTTGGAAACCCGGGAGATTACGTCGACGCTGCTGATTATGAAGCTGTGCTGCTGACCTTGGCAGAAAGCGATGGAAGCGGGAGGAGAGGGGCTCCACCGGCCGCAAAATCTGCGGTGGAGTTGCTGCCGACGGTGGAGATTGTGTCAGAGGATCAAGCTTTGGTGTGTGCTATATGCAAAGATATGGTGGGTGTGGGAAGCATGGCAAGGCAATTGCCCTGCGGCCATCAGTACCATGGGGATTGCATAGTTCCCTGGTTGGGCTCGAGAAATTCATGCCCAGTGTGCAGGTTTGAGCTTCCAACGGATGACCAGGATTATGAGGAGGAGAAGAAGAAGAAGGTGATTGCCACCACTGCTAATGGGGCATCGGGTTCTGGTGGAACCGATGCGGGATCAGGTTTATTCTAA 1206 0.5216 MHENPYIICTYFTSNFVVLCCGAGPFPAVSQYLVVGESMAESPSPTPELPLPESDDSQYWCYHCDKRVSVETHPEGPDILCLECKHGFVESIPSPSLAPPFTTSDLIDDPHFESQFLRVLRLLSESARDEDAPPPPSRNRSSGDDFLRVEFEDWDDDEESSNNNNNDEDDEDDGVEFRDEGEEREGAEEHEDGVGVEDLSGDEAEEYLRRRSMRNRIRDLTSRIRDLATGTRSRRNRILDWADILMGLEDNSIELRLQVPDSDRFFGNPGDYVDAADYEAVLLTLAESDGSGRRGAPPAAKSAVELLPTVEIVSEDQALVCAICKDMVGVGSMARQLPCGHQYHGDCIVPWLGSRNSCPVCRFELPTDDQDYEEEKKKKVIATTANGASGSGGTDAGSGLF 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g0052 401 MobiDBLite consensus disorder prediction 126 145 - -
Acco12g0052 401 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 368 IPR013083 -
Acco12g0052 401 ProSiteProfiles Zinc finger RING-type profile. 321 362 IPR001841 -
Acco12g0052 401 MobiDBLite consensus disorder prediction 180 194 - -
Acco12g0052 401 Pfam zinc-ribbon 58 92 IPR039525 GO:0061630
Acco12g0052 401 SMART ring_2 321 361 IPR001841 -
Acco12g0052 401 MobiDBLite consensus disorder prediction 153 204 - -
Acco12g0052 401 FunFam E3 ubiquitin-protein ligase RING1-like 284 368 - -
Acco12g0052 401 Pfam Ring finger domain 321 362 IPR001841 -
Acco12g0052 401 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 151 366 - -
Acco12g0052 401 MobiDBLite consensus disorder prediction 153 179 - -
Acco12g0052 401 SUPERFAMILY RING/U-box 316 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g0052 Acco-ChrAcco12 520022 524627 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g0052 189 397 C3H Transcription Factor Family AT5G01980 41.935 5.82e-37 138