Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g0042 ATGAACGCATGCACCAACGGTCCAGATTCATTGGGGCGTTCCCTATCGACGGTAAAATTCAACCGGAGCGTCCCAACATGTGGAGTCCCAACGCCGTCTCTCTTCGGCCAACCTTTTCTTTTTCAACAAAACTTTCGTGTCTTCCCATTCGATCTTCTTCCACTCCATTCTTTCTTCTCCTTCGAATTTCTGTCACGTTTTTTGGTTTCCATGGAGAATCACACCGCAAACAACACCAAAGCAGTTTCAGGAGGAGGAAAACCCATCAATGACAACGAAGAGCGTTCCAATTTGAATGAACAGGAGCACACAGAACAAGTGGATGTAGATGAGAATGGCGGTGGGGGTGAAGAAGAAGGAGAAAGAACTGGATCTGGCTCCATCCAGTCTCCTCATCGCACCCCTTCCAGAACCCCTTTTACTAATCTCAGTCAGGTCGATGCTGACCTCGCCCTTGCTCGAACCCTCCAGGAGCAGGAAAGGGCATATATGATGCTGAGAATGAACAACGAAGGAAGTGATTATGGAAGTTGGGATGCTGGCAGCTATTTGCATGATGACGGGGATGATTTTGAAGATCTACACGATGGTACTAATGATGATGATGAAGACGACGACCTTGATGATGAGGATGACGATGATGACAATATTGATGATGATGAAGATGCGTTTGATGCCCATGCTCATGTTAGTTCAGGCGAAATTGATGACACCACCAGCATTGAATTTGACCCTGATGTGTTCTCTAGTGATGAAGCCTATGCAAGAGCATTACAGGAGGCTGAAGAGAGGGATATGGCAGCTAGGCTATTTGCTATGGCTGGAATAAATGATCGGGAAGCTGAGGACACAGAAGACCATGGTGCTAATTCTCAGGAAGCATGGGAGGATGTTGATCCTGATGAACTTTCATATGAGGAACTCCTGGCATTGGGTGAAGTTGTTGGGACTGAGAGCAGAGGTCTTTCTACTGATACCATTGCCTCTTTGCCTTCAGTCAACTACAAGATGGGTAGTGATCAGCATGGAAGTAATGATTCGTGTGTCATATGCCGTGTGGATTATGAGGATGGTGAATCCTTGACTGCACTTTCTTGCAAACATCTGTACCATCCTGAGTGCATTAACAATTGGTTGAAAATAAACAAGGTTTGCCCTGTTTGCAGTGCCGAGGTTTCAGTTTCTGGGAGCAACTTGTAG 1200 0.4608 MNACTNGPDSLGRSLSTVKFNRSVPTCGVPTPSLFGQPFLFQQNFRVFPFDLLPLHSFFSFEFLSRFLVSMENHTANNTKAVSGGGKPINDNEERSNLNEQEHTEQVDVDENGGGGEEEGERTGSGSIQSPHRTPSRTPFTNLSQVDADLALARTLQEQERAYMMLRMNNEGSDYGSWDAGSYLHDDGDDFEDLHDGTNDDDEDDDLDDEDDDDDNIDDDEDAFDAHAHVSSGEIDDTTSIEFDPDVFSSDEAYARALQEAEERDMAARLFAMAGINDREAEDTEDHGANSQEAWEDVDPDELSYEELLALGEVVGTESRGLSTDTIASLPSVNYKMGSDQHGSNDSCVICRVDYEDGESLTALSCKHLYHPECINNWLKINKVCPVCSAEVSVSGSNL 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g0042 399 MobiDBLite consensus disorder prediction 193 221 - -
Acco12g0042 399 SMART ring_2 348 388 IPR001841 -
Acco12g0042 399 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 95 397 IPR043312 -
Acco12g0042 399 SUPERFAMILY RING/U-box 339 394 - -
Acco12g0042 399 Pfam Ring finger domain 346 388 IPR001841 -
Acco12g0042 399 MobiDBLite consensus disorder prediction 280 294 - -
Acco12g0042 399 MobiDBLite consensus disorder prediction 77 144 - -
Acco12g0042 399 MobiDBLite consensus disorder prediction 280 299 - -
Acco12g0042 399 FunFam E3 ubiquitin ligase BIG BROTHER-related 314 395 - -
Acco12g0042 399 ProSiteProfiles Zinc finger RING-type profile. 348 389 IPR001841 -
Acco12g0042 399 MobiDBLite consensus disorder prediction 189 221 - -
Acco12g0042 399 MobiDBLite consensus disorder prediction 93 110 - -
Acco12g0042 399 MobiDBLite consensus disorder prediction 123 144 - -
Acco12g0042 399 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 313 394 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g0042 Acco-ChrAcco12 450630 454866 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g0042 118 292 C3H Transcription Factor Family AT3G19910 49.714 4.32e-39 138